View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_high_41 (Length: 357)
Name: NF16632_high_41
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 341
Target Start/End: Original strand, 55202832 - 55203173
Alignment:
| Q |
14 |
taaacaacagaagtagaatttgcactcaacaacgatataataatcttcatatatttccacttattttcacacttctcattccatttataaactttcttaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55202832 |
taaacaacagaagtagaatttgcactcaacaacgatataataatcttcatatatttccacttattttcacacttctcattccatttataaactttcttaa |
55202931 |
T |
|
| Q |
114 |
tcacttccaaaacaatcat--------------cttcatcccaagcaataatgttatctatatattagaaaaaagatatttgatagcacgatcctgagca |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55202932 |
tcacttccaaaacaatcatttgaagttgttcatcttcatcccaagcaataatgttatctatatattagaaaaaagatatttgatagcacgatcctgagca |
55203031 |
T |
|
| Q |
200 |
caagaaaacggcataagaaaagcactacgcttgcatgaaggatcttgttcagcttcgagaaacttctcaacgatctcaggtgcgtttattagtaactgtt |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55203032 |
caagaaaacggcataagaaaagcaatacgcttacatgaaggatcttgttcagcttcgagaaacttctcaacgatctcaggtgcgtttattagtaactgtt |
55203131 |
T |
|
| Q |
300 |
ctccttgaggaagcttgtaaacagacataactgcgagaattg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55203132 |
ctccttgaggaagcttgtaaacagacataactgcgagaattg |
55203173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1471890 - 1471820
Alignment:
| Q |
1 |
accagcacattcataaacaacagaagtagaatttgcactcaacaacgatataataatcttcatatatttcc |
71 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
1471890 |
accagcacattcataaacaacagcagtagaattagcactcaacaaagaaataataatcttaatatatttcc |
1471820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 1471601 - 1471553
Alignment:
| Q |
290 |
agtaactgttctccttgaggaagcttgtaaacagacataactgcgagaa |
338 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
1471601 |
agtaactgttccccttgaggaagcttataaacagacataacagcgagaa |
1471553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 46466808 - 46466692
Alignment:
| Q |
169 |
aaaaagatatttgatagcacgatcctgagcacaagaaaacggcataagaaaagcactacgcttgcatgaaggatcttgttcagcttcgagaaacttctca |
268 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||| || || | ||| ||||||| ||| |||||||||||| |
|
|
| T |
46466808 |
aaaaagatatttgattgcacgatcctgagcacaagaaatcagcataagaaaagcattacgcttacacgacgaatcctgttcagattcaagaaacttctca |
46466709 |
T |
|
| Q |
269 |
acgatctcaggtgcgtt |
285 |
Q |
| |
|
|| ||||| || ||||| |
|
|
| T |
46466708 |
acaatctccggcgcgtt |
46466692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46466979 - 46466935
Alignment:
| Q |
1 |
accagcacattcataaacaacagaagtagaatttgcactcaacaa |
45 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
46466979 |
accagcacattcataaacaacagcattagaacttgcactcaacaa |
46466935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 22853795 - 22853691
Alignment:
| Q |
172 |
aagatatttgatagcacgatcctgagcacaagaaaacggcataagaaaagcactacgcttgcatgaaggatcttgttcagcttcgagaaacttctcaacg |
271 |
Q |
| |
|
|||||||| || | |||||||| ||||||| |||||||||||| ||||||| | ||||| |||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
22853795 |
aagatattggacaacacgatcccgagcacacaaaaacggcataaaaaaagcattgcgcttacatgaaggatcttgttgagattcgagaaacttctcaatg |
22853696 |
T |
|
| Q |
272 |
atctc |
276 |
Q |
| |
|
||||| |
|
|
| T |
22853695 |
atctc |
22853691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 18106757 - 18106670
Alignment:
| Q |
189 |
gatcctgagcacaagaaaacggcataagaaaagcactacgcttgcatgaaggatcttgttcagcttcgagaaacttctcaacgatctc |
276 |
Q |
| |
|
||||| ||||||| |||||| |||||| ||||||| ||||||| |||||||||||||||| || | ||||||||||||||| |||||| |
|
|
| T |
18106757 |
gatcccgagcacacgaaaacagcataaaaaaagcattacgcttacatgaaggatcttgttgagatacgagaaacttctcaatgatctc |
18106670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 31937431 - 31937479
Alignment:
| Q |
290 |
agtaactgttctccttgaggaagcttgtaaacagacataactgcgagaa |
338 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
31937431 |
agtaactgctccccttgaggaagcttataaacagacataacagcgagaa |
31937479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 52522337 - 52522377
Alignment:
| Q |
290 |
agtaactgttctccttgaggaagcttgtaaacagacataac |
330 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
52522337 |
agtaactgctccccttgaggaagcttataaacagacataac |
52522377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University