View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_45 (Length: 349)
Name: NF16632_high_45
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_45 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 8945102 - 8945419
Alignment:
| Q |
1 |
tcctataaaatatagcccaaaatcaaaaagcatgacaactgtgataagtatcattgcaataccaaattgtaataagtactaactttttattcaagttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945102 |
tcctataaaatatagcccaaaatcaaaaagcatgacaactgtgataagtatcattgcaataccaaattgtaataagtactaactttttattcaagttata |
8945201 |
T |
|
| Q |
101 |
ctattctactaattgtcatttaacatagtgatctactcatctacaaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945202 |
ctattctactaattgtcatttaacatagtgatct--------acaaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatc |
8945293 |
T |
|
| Q |
201 |
ctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945294 |
ctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaac |
8945393 |
T |
|
| Q |
301 |
atcaacttatttgggataacactaac |
326 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
8945394 |
atcaacttatttgggatagcactaac |
8945419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 326
Target Start/End: Complemental strand, 8975336 - 8975061
Alignment:
| Q |
44 |
ataagtatcattgcaataccaaattgtaataagtactaacttttt-attcaagttatactattctactaattgtcatttaacatagtgatctactcatct |
142 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||| ||||| ||||||||| | ||||||| | ||| | |||| | ||| |||||||| |
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| T |
8975336 |
ataagtatcattgcaatagcaaattgtaataagcactattttttttattcaagttgttttattctattgattttgatttgatatattgatctac------ |
8975243 |
T |
|
| Q |
143 |
acaaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgt |
242 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||| |||| || ||||||| |||||||| ||||||| |
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| T |
8975242 |
--aaattgaaattgggggttgttacaacaatagggctccttaccacatgcttcccatcctgccaagtgagatatccaaaagaaacttcattcttttgtgc |
8975145 |
T |
|
| Q |
243 |
cattctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacactaac |
326 |
Q |
| |
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|| ||| | |||||||||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||| ||||| |
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| T |
8975144 |
cactcttgcatcttcaatcctcaacttgtagcttaatttctcgtttttcttattgaacaccaacttatttgggataactctaac |
8975061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 145 - 322
Target Start/End: Complemental strand, 8963846 - 8963669
Alignment:
| Q |
145 |
aaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtca |
244 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||||||||||||||| || ||| |||| || ||||||| || |||||| || ||||||| |
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| T |
8963846 |
aaattaaaattgggcgttgttaccacaatagggctcctcaccacatgcttcccattcttccaagtgagatatccaaaagataattcattcttctgtgtca |
8963747 |
T |
|
| Q |
245 |
ttctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacac |
322 |
Q |
| |
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||| || ||||||||||||| ||||||||||| |||||||||||| |||||||| |||| ||||||| ||||||| |
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|
| T |
8963746 |
ttcgtcggtgttcaatcctcaacctgtagcttagcttctcattcttctcattgaacaccaacctatttggaataacac |
8963669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 8958723 - 8958654
Alignment:
| Q |
254 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacact |
323 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||| | |||||| |||||||||||||| |
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|
| T |
8958723 |
cttcaatcctcaacttgtagcttagtttctcattcttctcattgaataccaacttgtttgggataacact |
8958654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 9947818 - 9947887
Alignment:
| Q |
254 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacact |
323 |
Q |
| |
|
||||| |||||||||| | |||||| |||||||||||| || ||||| |||||| |||||||||||||| |
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|
| T |
9947818 |
cttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttgggataacact |
9947887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 139 - 321
Target Start/End: Original strand, 21686398 - 21686580
Alignment:
| Q |
139 |
atctacaaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattatttt |
238 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||||| |||||||| ||||||||| |||| | || |||||| || ||||||| ||| |||| |
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| T |
21686398 |
atctacaaattgaaattgatgttggttaccacaatagggctcctaaccacatgtttcccatcccgccaagagaggtaaccgaaggctactttattctttt |
21686497 |
T |
|
| Q |
239 |
gtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataaca |
321 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||||| | |||| |||||||| ||||||| |||||||||||| |||||| |
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|
| T |
21686498 |
gtgtcattcttgggccttcgatcttcaacttgtagcttatcttctcgttcttcttcttgaacaccaacttatttggaataaca |
21686580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 321
Target Start/End: Original strand, 34962042 - 34962197
Alignment:
| Q |
166 |
accacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctactt-cattattttgtgtcattctagggccttcaatcctc |
264 |
Q |
| |
|
||||||||||| ||||| || ||||||||| ||||| |||||| | || |||||||| |||| | ||| ||| |||||| || | ||||||||||| |
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| T |
34962042 |
accacaataggactcctaacaacatgcttcacatccatccatgttagatatccaaaagccactttctttaattt-tgtcatacttgcaacttcaatcctc |
34962140 |
T |
|
| Q |
265 |
aacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataaca |
321 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||| |||| ||| || |||||||||||| |
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|
| T |
34962141 |
aatttgtagcttagcttctcattcttctcattaaacaccaaattgtttgggataaca |
34962197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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