View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_46 (Length: 346)

Name: NF16632_high_46
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_46
NF16632_high_46
[»] chr7 (12 HSPs)
chr7 (16-334)||(35198661-35198979)
chr7 (98-180)||(23434697-23434779)
chr7 (45-181)||(39523575-39523711)
chr7 (41-156)||(33852510-33852625)
chr7 (49-180)||(24845478-24845607)
chr7 (47-151)||(41906336-41906440)
chr7 (16-134)||(20954726-20954845)
chr7 (16-132)||(11789789-11789904)
chr7 (136-190)||(17749685-17749739)
chr7 (140-180)||(4090116-4090156)
chr7 (120-188)||(31502583-31502651)
chr7 (136-180)||(37489903-37489947)
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-184)||(296833-297002)
[»] chr1 (9 HSPs)
chr1 (39-185)||(21977183-21977329)
chr1 (16-184)||(28274783-28274952)
chr1 (39-145)||(21970316-21970422)
chr1 (30-180)||(1468443-1468592)
chr1 (83-180)||(18157039-18157136)
chr1 (74-162)||(14340994-14341082)
chr1 (46-105)||(36383104-36383163)
chr1 (113-162)||(31602078-31602127)
chr1 (49-132)||(7549634-7549718)
[»] chr4 (7 HSPs)
chr4 (16-184)||(27654474-27654643)
chr4 (16-178)||(5994882-5995045)
chr4 (22-184)||(24106667-24106830)
chr4 (83-175)||(3976415-3976507)
chr4 (39-180)||(40661963-40662102)
chr4 (120-162)||(40615247-40615289)
chr4 (49-146)||(32949586-32949683)
[»] chr2 (11 HSPs)
chr2 (46-184)||(43400130-43400268)
chr2 (39-186)||(31494203-31494348)
chr2 (16-185)||(30706267-30706435)
chr2 (22-175)||(37077966-37078120)
chr2 (47-145)||(385027-385125)
chr2 (49-180)||(19190631-19190764)
chr2 (47-156)||(19953420-19953529)
chr2 (49-186)||(42669778-42669915)
chr2 (16-186)||(18949209-18949380)
chr2 (136-183)||(44152368-44152415)
chr2 (120-188)||(37398804-37398872)
[»] chr5 (5 HSPs)
chr5 (88-187)||(1649544-1649643)
chr5 (16-134)||(6529888-6530007)
chr5 (79-180)||(32309481-32309582)
chr5 (83-185)||(10299881-10299983)
chr5 (112-180)||(36494224-36494293)
[»] chr8 (10 HSPs)
chr8 (21-152)||(29011082-29011214)
chr8 (47-151)||(9008988-9009092)
chr8 (49-180)||(45524924-45525055)
chr8 (39-186)||(13105359-13105505)
chr8 (15-184)||(11574044-11574214)
chr8 (22-162)||(9953689-9953830)
chr8 (16-188)||(24683564-24683737)
chr8 (55-162)||(16314329-16314436)
chr8 (78-162)||(27799283-27799367)
chr8 (113-184)||(20545929-20546000)
[»] chr3 (5 HSPs)
chr3 (16-191)||(7640609-7640785)
chr3 (39-150)||(44225873-44225984)
chr3 (47-180)||(22813318-22813451)
chr3 (136-180)||(53655405-53655449)
chr3 (83-150)||(8475185-8475252)
[»] chr6 (5 HSPs)
chr6 (83-185)||(25326827-25326929)
chr6 (83-185)||(26159362-26159464)
chr6 (30-180)||(12690253-12690404)
chr6 (110-185)||(34905332-34905407)
chr6 (136-180)||(6163517-6163561)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 35198661 - 35198979
Alignment:
Q  16 tcttctcaacactttctcaaacatcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcataca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35198661 tcttctcaacactttctcaaacatcacttcattattggcttaaattaaggtgagtttgacatattggaaatgggttccattaaaagtggttgatcataca 35198760  T
Q  116 ttagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactcttttttattagaacctcattaactgcataat 215  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35198761 ttagtttcttcaaataagagagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactcttttttattagaacctcattaactgcataat 35198860  T
Q  216 tgtccccagcacaagggtgaataaaaatgagaaatgaaatatgtttctgatcagaccaatgctcgatctgggttgggatccaacccatcttgaatcctat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35198861 tgtccccagcacaagggtgaataaaaatgagaaatgaaatatgtctctgatcagaccaatgctcgatctgggttgggatccaacccatcttgaatcctat 35198960  T
Q  316 gcatagcggattcatttca 334  Q
    |||||||||||||||||||    
T  35198961 gcatagcggattcatttca 35198979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 23434779 - 23434697
Alignment:
Q  98 aaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    |||||||| ||||||||||| |||| ||| ||||||| | ||||||||  ||||| |||||||||| || |||||||||||||    
T  23434779 aaagtggtggatcatacattggttttatccaataagagaatgagtgttgaagagagtgttgaaaaaggagtgtccctagcatt 23434697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 39523711 - 39523575
Alignment:
Q  45 cattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgt 144  Q
    ||||||||  |||||||||||||  | | |||||||| |||||||||||| | ||||||||    |||||  |||||||||| ||||| | | |||||||    
T  39523711 cattattgatttaaatcaaggtggatctcacatattggaaatgggttccacttaaagtggtgagacataccctagtttcatccaataaaagaatgagtgt 39523612  T
Q  145 tagagagaatgttgaaaaaagaatgtccctagcatta 181  Q
    |||| ||| ||||||||| |||  ||||||| |||||    
T  39523611 tagacagagtgttgaaaagagagcgtccctatcatta 39523575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 33852510 - 33852625
Alignment:
Q  41 acttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtga 140  Q
    ||||||||||||| | |||| ||| ||||  | |||||||| |||||| ||||| | |||||||| |  |||||| || ||||||| ||||||| | |||    
T  33852510 acttcattattggttcaaattaagatgagactcacatattggaaatggattccacttaaagtggtgggacatacactaatttcatctaataagagaatga 33852609  T
Q  141 gtgttagagagaatgt 156  Q
    |||||| |||||||||    
T  33852610 gtgttaaagagaatgt 33852625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 24845478 - 24845607
Alignment:
Q  49 attggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttaga 148  Q
    |||||||||||||| ||||||| | |||  ||| |||||||||||| | |||||||| | ||| ||||| |||| | | ||| ||| ||||| ||||  |    
T  24845478 attggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtgggtcacacattggtttaagccaattagaaagtgaatgttgaa 24845577  T
Q  149 gagaatgttgaaaaaagaatgtccctagcatt 180  Q
    ||||  ||||  ||||||||||||||||||||    
T  24845578 gagagggttg--aaaagaatgtccctagcatt 24845607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 41906440 - 41906336
Alignment:
Q  47 ttattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgtta 146  Q
    ||||||| ||||||||| || ||| | |||  || |||||| |||||| | ||||| || |  |||| |||| ||||||||||||||||||| |||||||    
T  41906440 ttattggtttaaatcaatgtaagtctcacactttaaaaatgagttccacttaaagtagtaggacatatattaatttcatcaaataagatagtaagtgtta 41906341  T
Q  147 gagag 151  Q
    |||||    
T  41906340 gagag 41906336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 20954845 - 20954726
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||| ||||||||| ||||||  |||||||||||||||| ||||||| | |||  ||  ||||| |||||||| ||||| || | | ||||    
T  20954845 tcttttcaacactctctcaaacactcacttttttattggcttaaatcatggtgagtctcacactttagaaatgagttccattcaaagtagtgggttatac 20954746  T
Q  115 attagtttcatcaaataaga 134  Q
    |||| ||||| | |||||||    
T  20954745 attaatttcaccgaataaga 20954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 11789789 - 11789904
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| ||||||||||| |||||| ||| || |||||||| ||||||||||||| || |  || |||| |||||  ||||| |||||||||| |  |||||    
T  11789789 tcttttcaacactttcccaaacactcattttattattggtttaaatcaaggtgggtct--cacattggaaatgaattccactaaaagtggtgggacatac 11789886  T
Q  115 attagtttcatcaaataa 132  Q
    |||| ||||||| |||||    
T  11789887 attactttcatctaataa 11789904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 17749739 - 17749685
Alignment:
Q  136 agtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactctttttt 190  Q
    ||||||||||||||||| |||  |||||||| |||| |||||||| |||||||||    
T  17749739 agtgagtgttagagagagtgtccaaaaaagagtgtcgctagcatttctctttttt 17749685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 4090116 - 4090156
Alignment:
Q  140 agtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    ||||||| |||||||||||||||||||||| || |||||||    
T  4090116 agtgttaaagagaatgttgaaaaaagaatgcccttagcatt 4090156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 31502583 - 31502651
Alignment:
Q  120 tttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactctttt 188  Q
    ||||||| ||||| | ||||||||||||||||| |||||||||  || |||  |||||||| |||||||    
T  31502583 tttcatccaataaaagagtgagtgttagagagactgttgaaaagtgagtgttgctagcattcctctttt 31502651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 37489947 - 37489903
Alignment:
Q  136 agtgagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    |||||||||| |||||||||||||||| ||| ||||| |||||||    
T  37489947 agtgagtgtttgagagaatgttgaaaagagagtgtccttagcatt 37489903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 297002 - 296833
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||| ||||||||| ||||||||||||||| |||||| |||||| || | ||| |||| |||||||||||| | || ||||| |  |||||    
T  297002 tcttttcaacactctctcaaacactcacttcattattggtttaaatgaaggtgggtctcacacattggaaatgggttccacttaaggtggtgggacatac 296903  T
Q  115 attagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactc 184  Q
    | |||||||||| ||||||| ||||||||||||||||| ||||||||| | | |||||||||||||||||    
T  296902 actagtttcatccaataagagagtgagtgttagagagagtgttgaaaagaaagtgtccctagcattactc 296833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 21977329 - 21977183
Alignment:
Q  39 tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagt 138  Q
    |||||| |||||||| |||||||||| |  || | ||| |||| |||||||||||| | ||||| || |  ||||||||||||||||||||||||| |||    
T  21977329 tcactttattattggtttaaatcaagataggtctcacacattggaaatgggttccacttaaagtagtgggacatacattagtttcatcaaataagaaagt 21977230  T
Q  139 gagtgttagagagaatgttgaaaaaagaatgtccctagcattactct 185  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  21977229 gagttttagagagagtgttgaaaagagaatgtccctagcattactct 21977183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 28274952 - 28274783
Alignment:
Q  16 tcttctcaacactttctcaaacatc-acttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||| ||| ||||| | |||| |||||||| ||||||||||||| || | ||| |||| |||||||||||| | || ||| | |  |||||    
T  28274952 tcttttcaacactctcttaaacacccactttattattggtttaaatcaaggtgggtctcacacattggaaatgggttccacttaaggtgatgggacatac 28274853  T
Q  115 attagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactc 184  Q
    | |||||||||| ||||||| ||||||||||||||||| ||||||||| ||| ||||||||| |||||||    
T  28274852 actagtttcatccaataagagagtgagtgttagagagagtgttgaaaagagagtgtccctagtattactc 28274783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 21970316 - 21970422
Alignment:
Q  39 tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagt 138  Q
    ||||||||||||||| |||||||||| || || | ||| ||||||||||||||||| | |||||||| |  |||||| |||||||||  ||||||| |||    
T  21970316 tcacttcattattggtttaaatcaagatgggtctcacacattgaaaatgggttccacttaaagtggtgggacatacactagtttcattcaataagagagt 21970415  T
Q  139 gagtgtt 145  Q
    |||||||    
T  21970416 gagtgtt 21970422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 1468592 - 1468443
Alignment:
Q  30 tctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaa 128  Q
    ||||||||| |||| |||||||| | ||||||||||||| || | ||| |||| |||| ||||||| | |||||| |  | |||||| |||||| ||| |    
T  1468592 tctcaaacactcacctcattatttgtttaaatcaaggtgggtctcacacattggaaataggttccacttaaagtgatgaaacatacactagtttaatcca 1468493  T
Q  129 ataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    |||||| ||||||||||||||||  ||||||||  ||| |||||||||||||    
T  1468492 ataagagagtgagtgttagagag--tgttgaaatgagagtgtccctagcatt 1468443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 18157136 - 18157039
Alignment:
Q  83 aaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    ||||| |||||| | |||||||| |  ||||||||| ||||||| ||||| | |||| |||||||||||| ||||||||| ||| |||||||||||||    
T  18157136 aaatgtgttccacttaaagtggtgggacatacattaatttcatccaataaaaaagtgggtgttagagagagtgttgaaaagagagtgtccctagcatt 18157039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 14340994 - 14341082
Alignment:
Q  74 acatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaa 162  Q
    |||||||| |||||||||||| | |||||||| |  |||| |||||||||||| ||||| | | ||||||||||||||| |||||||||    
T  14340994 acatattggaaatgggttccacttaaagtggtgggacatatattagtttcatccaataaaaaaatgagtgttagagagagtgttgaaaa 14341082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 36383163 - 36383104
Alignment:
Q  46 attattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggt 105  Q
    |||||| ||||||||||||| |||| | ||| ||| ||||||||||||| ||||||||||    
T  36383163 attatttgcttaaatcaaggcgagtctcacacattaaaaatgggttccactaaaagtggt 36383104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 31602127 - 31602078
Alignment:
Q  113 acattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaa 162  Q
    |||| ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  31602127 acatgagtttcatccaataagagaatgagtgttagagagagtgttgaaaa 31602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 7549718 - 7549634
Alignment:
Q  49 attggcttaaatcaaggtgagtttgacatattg-aaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataa 132  Q
    |||||||||||| | ||||||| | |||  ||| |||||| |||||| | |||||||||| |||||||||||||| ||| |||||    
T  7549718 attggcttaaattatggtgagtctcacactttggaaaatgtgttccacttaaagtggttggtcatacattagttttatccaataa 7549634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 27654643 - 27654474
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||| ||||||||| ||| || |||||||| |||||||||||||  ||| |||  ||| |||||||||||| | |||||||| |  |||||    
T  27654643 tcttttcaacactctctcaaacactcaatttattattggtttaaatcaaggtggatttcacacgttggaaatgggttccacttaaagtggtgggacatac 27654544  T
Q  115 attagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactc 184  Q
    |||||||| ||| ||||||| | ||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  27654543 attagttttatccaataagagaatgagtgttagagagagtgttgaaaagagagtgtccctagcattactc 27654474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 5994882 - 5995045
Alignment:
Q  16 tcttctcaacactttctcaaacat-cacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||| |||| ||||| |||||  | |||| ||||||||| |||| || | ||| |||| |||||||||||| | ||||||||   ||||||    
T  5994882 tcttttcaacactctctccaacattcactttctaattgacttaaatcatggtgggtctcacacattggaaatgggttccacttaaagtggtgagtcatac 5994981  T
Q  115 attagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagca 178  Q
    |||||||| ||| ||||||| | ||||||||| ||||| ||||||||| |||||||||||||||    
T  5994982 attagttttatccaataagagaatgagtgttaaagagagtgttgaaaagagaatgtccctagca 5995045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 24106667 - 24106830
Alignment:
Q  22 caacactttctcaaacatc-acttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagt 120  Q
    ||||||| ||||||||| | ||||||||||||| ||||||||||||| || | ||| |||  ||||| |||||| | |||||  | |  ||| |||||||    
T  24106667 caacactctctcaaacacccacttcattattggtttaaatcaaggtgggtcttacacattagaaatgagttccacttaaagtcatgggacatgcattagt 24106766  T
Q  121 ttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactc 184  Q
    |||||| ||||||| |||| |||||||||||| ||||||||| ||| ||||  |||||||||||    
T  24106767 ttcatccaataagagagtgggtgttagagagagtgttgaaaagagagtgtcattagcattactc 24106830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 3976415 - 3976507
Alignment:
Q  83 aaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtcccta 175  Q
    |||||||||||| | ||| |||| ||||||||||| |||| ||||||||||| | ||||||||  ||||| ||||||||| ||| ||||||||    
T  3976415 aaatgggttccacttaaaatggtggatcatacattggttttatcaaataagagaatgagtgttgaagagagtgttgaaaatagagtgtcccta 3976507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 40661963 - 40662102
Alignment:
Q  39 tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagt 138  Q
    ||||||| ||||||| |||||| | |||| |||| |||  ||| |||||||||||| |  ||||||| |   | |||||| ||| ||| ||||||| |||    
T  40661963 tcacttctttattggtttaaattagggtgggttttacactttggaaatgggttccacttgaagtggtaggatacacattaattttatccaataagagagt 40662062  T
Q  139 gagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    || ||||||||||  ||||||||||||| |||| ||||||||    
T  40662063 gaatgttagagag--tgttgaaaaaagagtgtctctagcatt 40662102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 40615289 - 40615247
Alignment:
Q  120 tttcatcaaataagatagtgagtgttagagagaatgttgaaaa 162  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  40615289 tttcatccaataagatagtgaatgttagagagagtgttgaaaa 40615247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 32949683 - 32949586
Alignment:
Q  49 attggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgtta 146  Q
    |||||||||||||| |||| || | |||  ||| ||||  |||||| | |||||||| |||||||||||||||| ||| ||||| | | |||||||||    
T  32949683 attggcttaaatcatggtgggtcttacactttggaaattagttccagttaaagtggtggatcatacattagttttatccaataaaaaaatgagtgtta 32949586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 43400268 - 43400130
Alignment:
Q  46 attattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgtt 145  Q
    |||||||| ||||||||||||| |||| ||| ||||| ||| ||||||| | |||||||| |  |||||| |||||||||| ||||||| ||||||||||    
T  43400268 attattggtttaaatcaaggtgggtttcacacattgataataggttccacttaaagtggtgggacatacactagtttcatccaataagaaagtgagtgtt 43400169  T
Q  146 agagagaatgttgaaaaaagaatgtccctagcattactc 184  Q
    ||||||| ||||||||| ||| | ||| |||||||||||    
T  43400168 agagagagtgttgaaaagagagtatccatagcattactc 43400130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 31494348 - 31494203
Alignment:
Q  39 tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagt 138  Q
    ||||||||||||||||||||||||||||| || | ||| |||| |||||||||||| | ||||| || |  ||||||||| ||||||| ||||||| |||    
T  31494348 tcacttcattattggcttaaatcaaggtgggtctcacacattggaaatgggttccacttaaagtagtgggacatacattattttcatccaataagagagt 31494249  T
Q  139 gagtgttagagagaatgttgaaaaaagaatgtccctagcattactctt 186  Q
    |||||||||||||  ||||||||| ||| |||  |||||| |||||||    
T  31494248 gagtgttagagag--tgttgaaaagagagtgttgctagcactactctt 31494203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 30706435 - 30706267
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||| ||||||||| |||||| ||| |||| |||||| |||||| || | | | |||||||||| |||||||| ||| ||||    |||||    
T  30706435 tcttttcaacactctctcaaacactcactttattgttggtttaaattaaggtgggtctcatacattgaaaatgagttccatttaaactggtgagacatac 30706336  T
Q  115 attagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactct 185  Q
    |||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||  ||||||||||||    
T  30706335 attaatttcatcaaataagagagtgagtgttagagag--taatgaaaaaagaatgtctttagcattactct 30706267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 37078120 - 37077966
Alignment:
Q  22 caacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagt 120  Q
    ||||||| ||||||||| ||||||||||||||| |||||| |||||| || | ||| |||| |||||| ||||| | |||||||| |  |||||| || |    
T  37078120 caacactctctcaaacactcacttcattattggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtgggacatacactaat 37078021  T
Q  121 ttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtcccta 175  Q
    | |||| ||||||| |||| |||||||||| | ||||||||| ||| ||||||||    
T  37078020 tacatccaataagagagtgtgtgttagagaaagtgttgaaaagagagtgtcccta 37077966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 385027 - 385125
Alignment:
Q  47 ttattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgtt 145  Q
    ||||||| |||||||||||||  | | ||| ||||||||||| ||||| | || ||||| |  |||||| |||||||||| ||||||| ||||||||||    
T  385027 ttattggtttaaatcaaggtggatctcacacattgaaaatggattccacttaaggtggtgggacatacactagtttcatccaataagagagtgagtgtt 385125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 19190764 - 19190631
Alignment:
Q  49 attggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacat--tagtttcatcaaataagatagtgagtgtta 146  Q
    ||||| ||||||||||||| || | |||  || ||||||| ||||| | |||||||| || |||||||  || ||||||| ||||||| | |||||||||    
T  19190764 attggtttaaatcaaggtgggtctaacactttaaaaatggattccacttaaagtggtggaacatacatattaatttcatccaataagaaaatgagtgtta 19190665  T
Q  147 gagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    |||||| || | |||| ||| |||| ||||||||    
T  19190664 gagagagtgcttaaaagagagtgtctctagcatt 19190631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 19953529 - 19953420
Alignment:
Q  47 ttattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgtta 146  Q
    ||||||| ||||||||  |||||| | |||  ||| |||||||||||| | |||||||| | ||||||||| |||||||| ||||| | | ||||||||     
T  19953529 ttattggattaaatcatagtgagtctcacactttggaaatgggttccacttaaagtggtgggtcatacattggtttcatccaataaaagaatgagtgttg 19953430  T
Q  147 gagagaatgt 156  Q
     |||||||||    
T  19953429 aagagaatgt 19953420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 42669778 - 42669915
Alignment:
Q  49 attggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttaga 148  Q
    |||||||||||||| |||| |||| |||  ||| ||||||||| || | |||||||| | |||||||||  ||  ||| ||||||| | ||||||||  |    
T  42669778 attggcttaaatcatggtgggtttcacactttggaaatgggtttcacttaaagtggtgggtcatacattgattctatccaataagaaaatgagtgttgaa 42669877  T
Q  149 gagaatgttgaaaaaagaatgtccctagcattactctt 186  Q
    |||| ||||||||| |||  ||||||| |||| |||||    
T  42669878 gagagtgttgaaaagagagcgtccctaacattcctctt 42669915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 18949209 - 18949380
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| ||||||||||||| |||| ||| ||  | |||||||||||||| |||| || | |||  || ||||||||||||| | |||||| | ||||||||    
T  18949209 tcttttcaacactttctccaacactcaatttctaattggcttaaatcatggtgggtctcacactttaaaaatgggttccacttaaagtgatggatcatac 18949308  T
Q  115 attagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactctt 186  Q
    ||| |||| ||| ||||| | | | | | ||  ||||||||||||||| ||| |||| ||| |||| |||||    
T  18949309 attggttttatccaataaaaaaataattattgaagagaatgttgaaaagagagtgtctctaacattcctctt 18949380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 44152368 - 44152415
Alignment:
Q  136 agtgagtgttagagagaatgttgaaaaaagaatgtccctagcattact 183  Q
    ||||||||||||||||||||||||| ||||| |||  |||||||||||    
T  44152368 agtgagtgttagagagaatgttgaacaaagagtgttgctagcattact 44152415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 37398872 - 37398804
Alignment:
Q  120 tttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactctttt 188  Q
    ||||||| ||||| | ||| |||||||||||||||| | |||||||| |||  |||||||| |||||||    
T  37398872 tttcatccaataaaaaagtaagtgttagagagaatgctcaaaaaagagtgttgctagcattcctctttt 37398804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 1649643 - 1649544
Alignment:
Q  88 ggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactcttt 187  Q
    ||||||| | |||||||| || ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||| |||| ||||||    
T  1649643 ggttccacttaaagtggtagagcatacattaatttcatccaataagatagtgagtgttagagagagtgttgaaaagagagtgtccctaacattcctcttt 1649544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 6529888 - 6530007
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||||||||||||| || ||| ||| ||||||||||| ||||||||| | ||| |||  |||||||||||| ||||| |||| |  |||||    
T  6529888 tcttttcaacactttctcaaacactcgctttatttttggcttaaattaaggtgagtctcacacattagaaatgggttccactaaaaatggtgggacatac 6529987  T
Q  115 attagtttcatcaaataaga 134  Q
    |||||||||||| |||||||    
T  6529988 attagtttcatccaataaga 6530007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 32309582 - 32309481
Alignment:
Q  79 ttgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagca 178  Q
    ||||||||||||| || |  ||||||| |  ||||||||| ||| ||| ||||||| |||||||| |||||||||||||||||| ||| |||| ||||||    
T  32309582 ttgaaaatgggtttcacttgaagtggtcggacatacattaattttatccaataagagagtgagtgctagagagaatgttgaaaagagagtgtctctagca 32309483  T
Q  179 tt 180  Q
    ||    
T  32309482 tt 32309481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 10299983 - 10299881
Alignment:
Q  83 aaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattac 182  Q
    |||||||| ||| |||||||||| | |||| |||| | |||||| ||||||| | ||||||||  ||||| ||||||||| ||| | ||||||||||| |    
T  10299983 aaatgggtcccactaaaagtggtgggtcatgcattgggttcatccaataagagaatgagtgttgaagagagtgttgaaaagagagtatccctagcatttc 10299884  T
Q  183 tct 185  Q
    |||    
T  10299883 tct 10299881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 36494293 - 36494224
Alignment:
Q  112 tacattagtttcatcaaat-aagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    ||||||| ||||||| ||| || | ||| |||||||||||||||||| |||| |||||||| ||||||||    
T  36494293 tacattaatttcatccaattaaaagagtaagtgttagagagaatgtttaaaagagaatgtctctagcatt 36494224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 29011214 - 29011082
Alignment:
Q  21 tcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattag 119  Q
    |||||||| ||||||||| ||||||| ||||||| ||||||| ||||||||   |||  ||| |||||||||||||| |||||||| |  ||||||||||    
T  29011214 tcaacactctctcaaacactcacttctttattggtttaaatcgaggtgagtcacacactttggaaatgggttccattcaaagtggtaggacatacattag 29011115  T
Q  120 tttcatcaaataagatagtgagtgttagagaga 152  Q
    ||||||| | ||||| | |||||||||||||||    
T  29011114 tttcatccattaagagaatgagtgttagagaga 29011082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 9008988 - 9009092
Alignment:
Q  47 ttattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgtta 146  Q
    ||||||||||||||||| |||||| | |||  |||||||||||||||| | |||||| | |  ||||||||| ||||| ||||||||| ||||| |||||    
T  9008988 ttattggcttaaatcaatgtgagtctcacactttgaaaatgggttccacttaaagtgatgggacatacattaatttcaccaaataagaaagtgattgtta 9009087  T
Q  147 gagag 151  Q
    |||||    
T  9009088 gagag 9009092  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 45524924 - 45525055
Alignment:
Q  49 attggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttaga 148  Q
    |||||||||||||| |||| |||| |||  ||| |||||||||||| | |||||||| | |||||||||  ||| ||| ||||||| | ||||||||  |    
T  45524924 attggcttaaatcatggtgggtttcacactttggaaatgggttccactcaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaa 45525023  T
Q  149 gagaatgttgaaaaaagaatgtccctagcatt 180  Q
    |||| ||||||||| ||| ||||||| |||||    
T  45525024 gagagtgttgaaaagagagtgtccctggcatt 45525055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 13105359 - 13105505
Alignment:
Q  39 tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagt 138  Q
    ||||||||||||||| |||||||||| || || | ||| |||| ||||||||||| |||||| | || |  |||||| |||||||||| ||||| | ||     
T  13105359 tcacttcattattggtttaaatcaagatgggtctcacacattggaaatgggttcccttaaaa-tcgtgggacatacactagtttcatctaataaaagagc 13105457  T
Q  139 gagtgttagagagaatgttgaaaaaagaatgtccctagcattactctt 186  Q
     ||||||| ||||| || |||||| ||| | |||||| ||||||||||    
T  13105458 aagtgttaaagagagtgctgaaaagagagtatccctaacattactctt 13105505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 11574044 - 11574214
Alignment:
Q  15 ttcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcata 113  Q
    ||||| |||||||| | ||| ||| |||| |||||||||||||||||||||||| || | ||| ||||||||| |||| || | ||| | || |  ||||    
T  11574044 ttcttttcaacactctttcatacactcacctcattattggcttaaatcaaggtgggtctcacacattgaaaattggtttcacttaaaatagtgggacata 11574143  T
Q  114 cattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactc 184  Q
    || |||||||  | | ||||| ||||||||||| ||||| |||| |||| ||| ||| |||| ||||||||    
T  11574144 cactagtttcggctattaagagagtgagtgttaaagagagtgttcaaaagagagtgttcctaacattactc 11574214  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 9953689 - 9953830
Alignment:
Q  22 caacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagt 120  Q
    ||||||| ||||||||| ||||||  ||||||| |||||||||||||| | | |||  ||| ||||| |||||| | |||||||| |  || |||||| |    
T  9953689 caacactatctcaaacactcacttttttattggtttaaatcaaggtgaatctcacactttggaaatgagttccacttaaagtggtgggacacacattaat 9953788  T
Q  121 ttcatcaaataagatagtgagtgttagagagaatgttgaaaa 162  Q
    ||||||  |||||| ||||||||||||| | |||||| ||||    
T  9953789 ttcatcccataagagagtgagtgttagaaaaaatgtttaaaa 9953830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 24683737 - 24683564
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||| |||| |||| ||||||  | |||||||||||||| | || || | |||| ||| |||||||||||| | |||||||| | ||| ||    
T  24683737 tcttttcaacactatctccaacactcactttctgattggcttaaatcatgatgggtctcacattttggaaatgggttccacttaaagtggtgggtcacac 24683638  T
Q  115 attagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactctttt 188  Q
    ||| |||| |   ||| ||| ||||||| ||| ||||| ||||||||| ||| ||||| ||||||| |||||||    
T  24683637 attggtttaagtcaattagaaagtgagtattaaagagagtgttgaaaagagagtgtccttagcatttctctttt 24683564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 16314329 - 16314436
Alignment:
Q  55 ttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaat 154  Q
    ||||||||||||| || | |||| || ||||||| ||| | | |||||||| || ||||||||| ||| ||| ||||| | ||||||||| |||||||||    
T  16314329 ttaaatcaaggtgggtctcacattttaaaaatggattcaacttaaagtggtggaacatacattaattttatccaataaaagagtgagtgtaagagagaat 16314428  T
Q  155 gttgaaaa 162  Q
    ||| ||||    
T  16314429 gtttaaaa 16314436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 27799283 - 27799367
Alignment:
Q  78 attgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaa 162  Q
    |||| |||| ||||||| | |||||||| |  ||||||||||||||||||||||| | |||||  |||||||| | |||||||||    
T  27799283 attggaaataggttccacttaaagtggtgggacatacattagtttcatcaaataaaagagtgatcgttagagaaattgttgaaaa 27799367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 20546000 - 20545929
Alignment:
Q  113 acattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactc 184  Q
    ||||| |||||||  ||||||| ||||| ||||||||||| ||||||||| ||| | |||||| ||||||||    
T  20546000 acatttgtttcatttaataagagagtgaatgttagagagagtgttgaaaagagagtatccctaacattactc 20545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 7640609 - 7640785
Alignment:
Q  16 tcttctcaacactttctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatac 114  Q
    |||| |||||||| || |||||| ||||||| ||||||| || ||||||||||||| | |||  | | |||| ||||||| | || ||||| |  |||||    
T  7640609 tcttttcaacactctcacaaacactcacttccttattggtttcaatcaaggtgagtctcacacttaggaaataggttccacttaatgtggtaggacatac 7640708  T
Q  115 attagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactctttttta 191  Q
    |||| ||||||| ||||||| ||  |||||||||| || ||||||||| ||| ||||||||||||| ||||| ||||    
T  7640709 attaatttcatccaataagaaagcaagtgttagagtgagtgttgaaaagagagtgtccctagcattcctcttcttta 7640785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 44225873 - 44225984
Alignment:
Q  39 tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagt 138  Q
    |||||| |||||||| |||||| ||| || || | ||| ||||||||||||||||| | |||||| | |  |||||| |||||||||| ||||||| |||    
T  44225873 tcactttattattggtttaaataaagctgggtctcacacattgaaaatgggttccacttaaagtgatgggacatacactagtttcatccaataagagagt 44225972  T
Q  139 gagtgttagaga 150  Q
    ||||||| ||||    
T  44225973 gagtgttggaga 44225984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 22813318 - 22813451
Alignment:
Q  47 ttattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgtta 146  Q
    |||||||||||||||| ||||||| | |||  ||  |||||||||||| |||||||||| | |||||||||   |||||| ||| ||| | ||||||||     
T  22813318 ttattggcttaaatcatggtgagtctcacactttcgaaatgggttccactaaaagtggtgggtcatacattgcattcatccaatgagaaaatgagtgttc 22813417  T
Q  147 gagagaatgttgaaaaaagaatgtccctagcatt 180  Q
     ||||| |||| |||| ||| | |||||| ||||    
T  22813418 aagagagtgttaaaaagagagtctccctaacatt 22813451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 53655449 - 53655405
Alignment:
Q  136 agtgagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||    
T  53655449 agtgagtgttggagagagtgttgaaaagagaatgtccctagcatt 53655405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 8475252 - 8475185
Alignment:
Q  83 aaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagaga 150  Q
    |||||||||||||| |||| |||    ||||||||||||||||| ||||||| ||||| |||||||||    
T  8475252 aaatgggttccatttaaagcggtgagacatacattagtttcatccaataagagagtgaatgttagaga 8475185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 25326929 - 25326827
Alignment:
Q  83 aaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattac 182  Q
    |||||||||||| | |||||||| | |||||||||  ||| ||| ||||||| | ||||||||  ||||| ||||||||| ||| |||||||| ||||||    
T  25326929 aaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtccctatcattac 25326830  T
Q  183 tct 185  Q
    |||    
T  25326829 tct 25326827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 26159464 - 26159362
Alignment:
Q  83 aaatgggttccattaaaagtggttgatcatacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattac 182  Q
    |||||||||||| | |||||||| | |||||||||  ||| ||| ||||||| | ||||||||  ||||| ||||||||| ||| |||||||| ||||||    
T  26159464 aaatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtccctatcattac 26159365  T
Q  183 tct 185  Q
    |||    
T  26159364 tct 26159362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 12690404 - 12690253
Alignment:
Q  30 tctcaaaca-tcacttcattattggcttaaatcaaggtgagtttgacatattgaaaatgggttccattaaaagtggttgatcatacattagtttcatcaa 128  Q
    ||||||||| || |||| ||||||| ||||||||||||| || | |||  ||| |||| | ||||| | ||||||||    ||| ||||| ||||||| |    
T  12690404 tctcaaacactctcttccttattggtttaaatcaaggtgggtctcacactttggaaatagattccacttaaagtggtgagacatgcattaatttcatcca 12690305  T
Q  129 ataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    |||| | ||  ||||||||||||| |||| |||| ||| |||||||||||||    
T  12690304 ataaaagagcaagtgttagagagagtgtttaaaatagagtgtccctagcatt 12690253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 34905407 - 34905332
Alignment:
Q  110 catacattagtttcatcaaataagatagtgagtgttagagagaatgttgaaaaaagaatgtccctagcattactct 185  Q
    ||||||||  ||||||| ||||| | ||||||||||||||||| |||||||||| || |||  |||||||| ||||    
T  34905407 catacattgatttcatccaataaaagagtgagtgttagagagagtgttgaaaaatgagtgttgctagcatttctct 34905332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 6163561 - 6163517
Alignment:
Q  136 agtgagtgttagagagaatgttgaaaaaagaatgtccctagcatt 180  Q
    ||||||||||||||||||| ||||||| ||| |||||||| ||||    
T  6163561 agtgagtgttagagagaatattgaaaagagagtgtccctaacatt 6163517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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