View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_49 (Length: 328)

Name: NF16632_high_49
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_49
NF16632_high_49
[»] chr8 (9 HSPs)
chr8 (16-236)||(31637357-31637577)
chr8 (16-146)||(31646194-31646324)
chr8 (21-117)||(31630092-31630188)
chr8 (21-114)||(31651658-31651751)
chr8 (21-117)||(31656437-31656533)
chr8 (154-230)||(28237290-28237366)
chr8 (154-192)||(12392774-12392812)
chr8 (155-231)||(981491-981566)
chr8 (154-230)||(38442435-38442511)
[»] chr1 (9 HSPs)
chr1 (153-230)||(31730521-31730598)
chr1 (153-206)||(12828059-12828112)
chr1 (154-231)||(46510473-46510550)
chr1 (154-230)||(12857614-12857690)
chr1 (155-201)||(43218339-43218385)
chr1 (154-231)||(2730393-2730470)
chr1 (154-199)||(23533045-23533090)
chr1 (154-215)||(27796824-27796885)
chr1 (154-230)||(21068661-21068737)
[»] chr5 (2 HSPs)
chr5 (18-113)||(9105454-9105549)
chr5 (156-230)||(29002146-29002220)
[»] chr4 (7 HSPs)
chr4 (154-231)||(6555873-6555950)
chr4 (154-230)||(15639007-15639083)
chr4 (154-201)||(45985066-45985113)
chr4 (154-203)||(32507964-32508013)
chr4 (154-191)||(34779255-34779292)
chr4 (154-202)||(12886425-12886473)
chr4 (154-230)||(16833427-16833503)
[»] chr2 (9 HSPs)
chr2 (154-230)||(6334110-6334186)
chr2 (154-230)||(20556063-20556139)
chr2 (154-199)||(10420210-10420255)
chr2 (153-230)||(10665351-10665428)
chr2 (154-199)||(13391325-13391370)
chr2 (154-230)||(35946032-35946109)
chr2 (154-202)||(25900775-25900823)
chr2 (153-201)||(39727786-39727834)
chr2 (154-202)||(41738084-41738132)
[»] chr7 (3 HSPs)
chr7 (154-228)||(8746507-8746581)
chr7 (154-228)||(33258483-33258557)
chr7 (154-202)||(41506548-41506596)
[»] chr3 (3 HSPs)
chr3 (153-191)||(48313717-48313755)
chr3 (154-230)||(36772562-36772636)
chr3 (154-230)||(31798078-31798154)
[»] scaffold0211 (1 HSPs)
scaffold0211 (154-231)||(15840-15917)
[»] chr6 (2 HSPs)
chr6 (157-202)||(27736983-27737028)
chr6 (154-230)||(7466473-7466549)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 31637357 - 31637577
Alignment:
Q  16 cacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgc 115  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||| ||||  |||| ||| ||||||||||||||||||||||||||||||||||||     
T  31637357 cacgaacaagctctggaacttttatcgacagaggatatgataaaattttgagcgatatcgagaaaagaattgctgattttacttttatacctgtaggtgt 31637456  T
Q  116 gttctttatgcattttgtctgcctctatacacggttcattaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaata 215  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31637457 gttctttatgcattttgtctgcctctatacgcggttcattaattaagtaaatgatacttataaatattcagaatttcggttttagtctttacagaaaata 31637556  T
Q  216 atcacaatttttagtttcagt 236  Q
    |||| | ||||||||||||||    
T  31637557 atcatactttttagtttcagt 31637577  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 31646194 - 31646324
Alignment:
Q  16 cacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646194 cacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgc 31646293  T
Q  116 gttctttatgcattttgtctgcctctataca 146  Q
    |||||||||||||||| ||||| | ||||||    
T  31646294 gttctttatgcattttctctgcatttataca 31646324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 31630092 - 31630188
Alignment:
Q  21 acaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgt 117  Q
    |||||||||||||||||| |  ||||||||  |||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  31630092 acaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgt 31630188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 31651658 - 31651751
Alignment:
Q  21 acaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtg 114  Q
    |||||||||||| ||||| | || ||||||  ||||| |||| ||| ||||||||||  |||||||||||||||||||||||||||||||||||    
T  31651658 acaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacctgtaggtg 31651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 31656437 - 31656533
Alignment:
Q  21 acaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgt 117  Q
    |||||||||||||| ||| |  |||||| |  |||| ||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  31656437 acaagctctggaacatttcttgacagagaaggtgatgaaattgtgagcaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgt 31656533  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 28237290 - 28237366
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||||| | ||||||||| |||||||| | ||||||||  |||| || | ||||||| ||||||||    
T  28237290 ttaattaagtaaatgatccctataaatattcagaattttgtttttagtccctacaaaataaaatcacactttttagt 28237366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 12392812 - 12392774
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttc 192  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  12392812 ttaattaagtaaatgatccttataaatttccagaatttc 12392774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 981491 - 981566
Alignment:
Q  155 taattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagtt 231  Q
    |||||||||||||||| |||||||||||  | ||||||| ||||||||  |||| |||| ||| ||| |||||||||    
T  981491 taattaagtaaatgatccttataaatatttataatttcgtttttagtccctaca-aaaaaaattacactttttagtt 981566  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 38442435 - 38442511
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||| | ||||||||||| || ||||| | ||||||||  |||| || | ||||||| ||||||||    
T  38442435 ttaattaagtaaatggtccttataaatattcataattttgtttttagtccctacaaaataaaatcacactttttagt 38442511  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 31730521 - 31730598
Alignment:
Q  153 attaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    |||||||||||||||||| | ||||||||| |||||||| | ||||||||  |||| || | ||||||||||||||||    
T  31730521 attaattaagtaaatgatccctataaatattcagaattttgtttttagtccctacaaaataaaatcacaatttttagt 31730598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 12828059 - 12828112
Alignment:
Q  153 attaattaagtaaatgatacttataaatatccagaatttcggttttagtcttta 206  Q
    ||||| ||||||||| || ||||||||||| ||||||||| |||||||||||||    
T  12828059 attaactaagtaaataattcttataaatattcagaatttcagttttagtcttta 12828112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 46510473 - 46510550
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagtt 231  Q
    ||||||||||||||| | | ||||||||| |||||||| | ||||||||  |||| |||| ||||||| |||||||||    
T  46510473 ttaattaagtaaatggtccctataaatattcagaattttgtttttagtccctacaaaaaaaaatcacactttttagtt 46510550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 12857614 - 12857690
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||| | ||||||||||| |||||||| | ||||||||  |||| || | ||||||| ||||||||    
T  12857614 ttaattaagtaaatggtccttataaatattcagaattttgtttttagtccatacaaaataaaatcacactttttagt 12857690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 43218339 - 43218385
Alignment:
Q  155 taattaagtaaatgatacttataaatatccagaatttcggttttagt 201  Q
    |||||||||||||  | |||||||||||||||||||||| |||||||    
T  43218339 taattaagtaaatagttcttataaatatccagaatttcgtttttagt 43218385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 2730470 - 2730393
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagtt 231  Q
    |||||||||||||| || ||||||||||| ||||||||   ||||| || ||||| || | ||||||| |||||||||    
T  2730470 ttaattaagtaaatcatccttataaatattcagaattttatttttaatccttacaaaataaaatcacactttttagtt 2730393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 23533090 - 23533045
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggtttta 199  Q
    ||||||||||||||||| ||||||||||| || |||||| ||||||    
T  23533090 ttaattaagtaaatgatccttataaatattcaaaatttctgtttta 23533045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 27796885 - 27796824
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaata 215  Q
    ||||| |||||||||||| ||||||||||  | ||||||  |||||||||||||| ||||||    
T  27796885 ttaatcaagtaaatgatagttataaatatttaaaatttcatttttagtctttacaaaaaata 27796824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 21068737 - 21068661
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||| ||||||||| | | ||||||||| |||||||| | |||||||||||||| || | |||| || ||||||||    
T  21068737 ttaatcaagtaaatggtccctataaatattcagaattttgtttttagtctttacaaaataaaatcgcattttttagt 21068661  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 9105549 - 9105454
Alignment:
Q  18 cgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggt 113  Q
    ||||| ||||||||||| ||| |   ||| |||| |||||| ||| |||||||||||||| ||| |||||| || ||||||||||| |||||||||    
T  9105549 cgtactagctctggaacatttctggccaggggacgtgataagattgtgaggaatattgagaaaaaaattgccgactttacttttattcctgtaggt 9105454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 29002220 - 29002146
Alignment:
Q  156 aattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||| | ||||||||||| |||||||| | ||||| ||  |||| || | ||||||||||||||||    
T  29002220 aattaagtaaatggttcttataaatattcagaattttgtttttaatccctacaaaataaaatcacaatttttagt 29002146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 6555873 - 6555950
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagtt 231  Q
    ||||||||||||||| | | |||||||||||||||||||  ||||||||| |||| |||  |||| || |||||||||    
T  6555873 ttaattaagtaaatggtccctataaatatccagaatttcatttttagtctatacaaaaacaaatcgcactttttagtt 6555950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 15639007 - 15639083
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||| ||||||| ||||||||||| |||||||| | ||||||||  |||| || | ||||||| ||||||||    
T  15639007 ttaattaaggaaatgatccttataaatattcagaattttgtttttagtccctacaaaataaaatcacactttttagt 15639083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 45985113 - 45985066
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagt 201  Q
    |||||||| |||||||| |||||||||||||| ||||||| |||||||    
T  45985113 ttaattaaataaatgattcttataaatatccataatttcgtttttagt 45985066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 32507964 - 32508013
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtct 203  Q
    ||||||||||||||||| | ||||||||| |||||||| | |||||||||    
T  32507964 ttaattaagtaaatgatccctataaatattcagaattttgtttttagtct 32508013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 34779292 - 34779255
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaattt 191  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  34779292 ttaattaagtaaatgatccttataaatattcagaattt 34779255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 12886425 - 12886473
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtc 202  Q
    ||||||||||||||||| | ||||||||| |||||||| | ||||||||    
T  12886425 ttaattaagtaaatgattcctataaatattcagaattttgtttttagtc 12886473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 16833503 - 16833427
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||| | ||||||||||  |||||||| | ||||||||  |||| || | ||||||| ||||||||    
T  16833503 ttaattaagtaaatggtccttataaatagtcagaattttgtttttagtccctacaaaataaaatcacactttttagt 16833427  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 6334110 - 6334186
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||| | ||||||||||| ||||||||   |||||||| ||||| || | ||||||| ||||||||    
T  6334110 ttaattaagtaaatggtccttataaatattcagaattttatttttagtccttacaaaataaaatcacactttttagt 6334186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 20556139 - 20556063
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||| |  |||||||||| |||||||| | ||||||||| |||| || | ||||||| ||||||||    
T  20556139 ttaattaagtaaatggtctttataaatattcagaattttgtttttagtctctacaaaataaaatcacactttttagt 20556063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 10420255 - 10420210
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggtttta 199  Q
    |||||||||||||| || |||||||| ||||||||||||| |||||    
T  10420255 ttaattaagtaaattattcttataaaaatccagaatttcgttttta 10420210  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 10665351 - 10665428
Alignment:
Q  153 attaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    |||||||||||||||| | |||||||||||  ||||||| | ||||||||||| || || | || |||| ||||||||    
T  10665351 attaattaagtaaatggtccttataaatatttagaattttgtttttagtctttgcaaaataaaaccacactttttagt 10665428  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 13391325 - 13391370
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggtttta 199  Q
    ||||||||||||||||| |||||||||||  ||||||||| |||||    
T  13391325 ttaattaagtaaatgattcttataaatatttagaatttcgttttta 13391370  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 35946109 - 35946032
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttac-agaaaataatcacaatttttagt 230  Q
    |||||||||||||||||  |||||||||| |||||||| | ||||||| | ||| | |||| ||||||| ||||||||    
T  35946109 ttaattaagtaaatgatctttataaatattcagaattttgtttttagtttctacaaaaaaaaaatcacactttttagt 35946032  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 25900775 - 25900823
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtc 202  Q
    ||||||||||||||||| ||||||||| | |||||||| | ||||||||    
T  25900775 ttaattaagtaaatgatccttataaatgttcagaattttgtttttagtc 25900823  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 39727834 - 39727786
Alignment:
Q  153 attaattaagtaaatgatacttataaatatccagaatttcggttttagt 201  Q
    |||||||||||||||||| | ||||||||| |||||||| | |||||||    
T  39727834 attaattaagtaaatgattcctataaatattcagaattttgtttttagt 39727786  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 41738132 - 41738084
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtc 202  Q
    ||||||||||||||| | ||||||||||| |||||||| | ||||||||    
T  41738132 ttaattaagtaaatggtccttataaatattcagaattttgtttttagtc 41738084  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 8746581 - 8746507
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaattttta 228  Q
    |||||||||||||||| || |||||| ||||| ||||| | |||||||| ||||| || | ||||||| ||||||    
T  8746581 ttaattaagtaaatgacacctataaagatccaaaattttgtttttagtccttacaaaataaaatcacacttttta 8746507  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 33258557 - 33258483
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaattttta 228  Q
    ||||||||||||||||| | ||||||||| |||||||| | ||||||||  |||| || | ||||||| ||||||    
T  33258557 ttaattaagtaaatgatccctataaatattcagaattttgtttttagtccctacaaaataaaatcacacttttta 33258483  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 41506596 - 41506548
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtc 202  Q
    ||||||||||||||||| | ||||||||| |||||||| | ||||||||    
T  41506596 ttaattaagtaaatgatccctataaatattcagaattttgtttttagtc 41506548  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 48313755 - 48313717
Alignment:
Q  153 attaattaagtaaatgatacttataaatatccagaattt 191  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  48313755 attaattaagtaaatgatccttataaatattcagaattt 48313717  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 36772562 - 36772636
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||| | | ||||||||| |||||||| |  || |||| ||||| |||||||||||| ||||||||    
T  36772562 ttaattaagtaaatggtccctataaatattcagaattttg--ttcagtccttacaaaaaataatcacactttttagt 36772636  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 31798078 - 31798154
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||  | ||||||||||| |||||||| | ||||||||  |||| || | ||||||| ||||||||    
T  31798078 ttaattaagtaaatcgtccttataaatattcagaattttgtttttagtccctacaaaataaaatcacactttttagt 31798154  T

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Target: scaffold0211 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 15917 - 15840
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagtt 231  Q
    ||||||||||||||| | | |||||||||||||||||||  ||||||||  |||| |||  |||| || |||||||||    
T  15917 ttaattaagtaaatggtccctataaatatccagaatttcatttttagtccatacaaaaataaatcgcactttttagtt 15840  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 27737028 - 27736983
Alignment:
Q  157 attaagtaaatgatacttataaatatccagaatttcggttttagtc 202  Q
    ||||||||||| || ||||||||||| |||||||||| ||||||||    
T  27737028 attaagtaaataatccttataaatattcagaatttcgtttttagtc 27736983  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 7466549 - 7466473
Alignment:
Q  154 ttaattaagtaaatgatacttataaatatccagaatttcggttttagtctttacagaaaataatcacaatttttagt 230  Q
    ||||||||||||||| | |||||||||||  ||||||| | |||||||| ||| | || | ||||||| ||||||||    
T  7466549 ttaattaagtaaatggtccttataaatatttagaattttgtttttagtccttataaaataaaatcacactttttagt 7466473  T

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