View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_5 (Length: 623)

Name: NF16632_high_5
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_5
NF16632_high_5
[»] chr5 (23 HSPs)
chr5 (19-354)||(19725210-19725543)
chr5 (429-620)||(30695293-30695482)
chr5 (429-623)||(32485950-32486143)
chr5 (429-623)||(26336770-26336964)
chr5 (428-623)||(19502306-19502501)
chr5 (429-584)||(12018731-12018888)
chr5 (429-584)||(12023289-12023446)
chr5 (429-584)||(7099374-7099531)
chr5 (429-584)||(7103943-7104100)
chr5 (426-584)||(16794105-16794265)
chr5 (429-584)||(16798669-16798826)
chr5 (429-623)||(36632314-36632494)
chr5 (427-616)||(43384943-43385138)
chr5 (429-584)||(37682036-37682182)
chr5 (429-573)||(40371750-40371892)
chr5 (429-620)||(40367579-40367757)
chr5 (478-612)||(20830304-20830437)
chr5 (428-584)||(37658731-37658878)
chr5 (429-584)||(10274546-10274698)
chr5 (429-540)||(10277204-10277313)
chr5 (478-553)||(20808675-20808749)
chr5 (376-429)||(19725577-19725630)
chr5 (555-587)||(5733082-5733114)
[»] chr7 (11 HSPs)
chr7 (424-623)||(22901149-22901348)
chr7 (429-620)||(27761397-27761586)
chr7 (427-620)||(27756844-27757035)
chr7 (435-623)||(47419543-47419729)
chr7 (429-612)||(35705634-35705815)
chr7 (428-584)||(7944636-7944794)
chr7 (429-584)||(7940083-7940240)
chr7 (429-623)||(7466488-7466669)
chr7 (498-622)||(733632-733756)
chr7 (501-603)||(13828087-13828189)
chr7 (459-540)||(37355589-37355670)
[»] chr4 (18 HSPs)
chr4 (429-623)||(31670090-31670283)
chr4 (429-620)||(53722007-53722196)
chr4 (429-623)||(8892585-8892778)
chr4 (429-623)||(10317028-10317220)
chr4 (429-623)||(27186142-27186338)
chr4 (427-584)||(3770840-3770999)
chr4 (426-584)||(44147020-44147180)
chr4 (429-584)||(44151558-44151715)
chr4 (436-623)||(43683639-43683813)
chr4 (429-623)||(50627907-50628087)
chr4 (527-623)||(35842843-35842939)
chr4 (429-584)||(41884925-41885076)
chr4 (429-584)||(31359151-31359303)
chr4 (429-584)||(49274517-49274668)
chr4 (429-584)||(31354678-31354829)
chr4 (464-613)||(53785880-53786028)
chr4 (493-534)||(45976222-45976263)
chr4 (457-508)||(35842797-35842847)
[»] chr6 (13 HSPs)
chr6 (429-620)||(8315471-8315661)
chr6 (429-620)||(17096242-17096431)
chr6 (429-620)||(8320010-8320199)
chr6 (428-621)||(17895690-17895882)
chr6 (429-620)||(27552078-27552267)
chr6 (429-623)||(14531752-14531945)
chr6 (429-621)||(17886815-17887000)
chr6 (429-620)||(17779914-17780104)
chr6 (429-618)||(27574708-27574884)
chr6 (468-584)||(6440865-6440979)
chr6 (492-533)||(17163689-17163730)
chr6 (496-534)||(7888212-7888250)
chr6 (492-533)||(17159659-17159700)
[»] chr3 (14 HSPs)
chr3 (429-620)||(21847109-21847300)
chr3 (429-620)||(21850199-21850390)
chr3 (429-623)||(9697586-9697780)
chr3 (429-623)||(43547723-43547917)
chr3 (429-623)||(11004368-11004560)
chr3 (429-623)||(9105275-9105467)
chr3 (429-584)||(54171924-54172081)
chr3 (429-584)||(54167344-54167501)
chr3 (507-623)||(43554645-43554761)
chr3 (428-584)||(39399127-39399280)
chr3 (429-508)||(43554292-43554371)
chr3 (490-612)||(755889-756012)
chr3 (476-584)||(38175790-38175896)
chr3 (501-534)||(755824-755857)
[»] chr8 (16 HSPs)
chr8 (429-623)||(28644562-28644754)
chr8 (428-623)||(33071917-33072110)
chr8 (429-623)||(42234659-42234851)
chr8 (429-620)||(30410297-30410486)
chr8 (429-584)||(197684-197841)
chr8 (429-584)||(202202-202359)
chr8 (429-584)||(312521-312678)
chr8 (429-584)||(317039-317196)
chr8 (429-623)||(38757003-38757183)
chr8 (494-620)||(30405788-30405914)
chr8 (429-584)||(43807485-43807640)
chr8 (429-584)||(43812044-43812199)
chr8 (429-531)||(41949802-41949902)
chr8 (429-527)||(41945339-41945434)
chr8 (458-609)||(27435169-27435314)
chr8 (429-472)||(30405918-30405960)
[»] chr2 (10 HSPs)
chr2 (429-623)||(12999429-12999622)
chr2 (429-620)||(8055392-8055581)
chr2 (428-620)||(8050838-8051028)
chr2 (429-584)||(36670503-36670660)
chr2 (429-584)||(36675051-36675208)
chr2 (429-620)||(6463406-6463583)
chr2 (429-593)||(13270980-13271131)
chr2 (429-584)||(35950443-35950595)
chr2 (429-584)||(41093824-41093976)
chr2 (496-584)||(34590280-34590366)
[»] chr1 (7 HSPs)
chr1 (427-620)||(39793829-39794020)
chr1 (429-623)||(16588443-16588635)
chr1 (429-623)||(43591786-43591978)
chr1 (428-623)||(26311521-26311702)
chr1 (429-623)||(26316013-26316193)
chr1 (429-584)||(10504436-10504588)
chr1 (555-587)||(41879945-41879977)
[»] scaffold0044 (2 HSPs)
scaffold0044 (428-584)||(49445-49603)
scaffold0044 (429-584)||(44865-45022)
[»] scaffold0440 (2 HSPs)
scaffold0440 (429-584)||(2980-3137)
scaffold0440 (429-584)||(7506-7662)
[»] scaffold0076 (1 HSPs)
scaffold0076 (21-115)||(20637-20728)
[»] scaffold0006 (1 HSPs)
scaffold0006 (431-533)||(60201-60302)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 19725210 - 19725543
Alignment:
Q  19 ggaccataccttataccgtcagtacggccaatatccttctcaattcttttgagtgcagacaataattcatgtggcccgagtttagtaacagatcttactg 118  Q
    ||||||||||||||||||||||||||||| || |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19725210 ggaccataccttataccgtcagtacggcccatgtccttctcgattcgtttcagtgcagacaataattcatgtggcccgagtttagtaacagctcttactg 19725309  T
Q  119 ctgagttgaggaagcgaggttggtcagtaacatgcgtcggtgctgtctcatacagacttgcatgtcttgtaatgtttatgcctgactttctcatcaattt 218  Q
    ||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19725310 ctgagttcaggaagcgaggttggtcagtaacatacgctggtgctgtctcatacagactcgcatgtcttgtaatgtttatgcctgactttctcatcaattt 19725409  T
Q  219 caaggcttccttgaagttgtgtagtctatcacctatatattacatccaaaagcaatcgctacttcctcatcttgagtgggaagttctatagaggagtttg 318  Q
    |||||||||||||||||| ||||||||||| ||   | ||||| ||| ||||||||| |||||||||||||||||||| ||||||| | |||||||||||    
T  19725410 caaggcttccttgaagttctgtagtctatcgcc--aacattacttcccaaagcaatcactacttcctcatcttgagtgtgaagttcaacagaggagtttg 19725507  T
Q  319 gagctgtgtggagagaagacaaacccaatactgcaa 354  Q
    |||||||||| ||||| ||||| || | ||||||||    
T  19725508 gagctgtgtgaagagatgacaatccgagtactgcaa 19725543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 429 - 620
Target Start/End: Original strand, 30695293 - 30695482
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  30695293 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 30695390  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30695391 ttagaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 30695482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 32486143 - 32485950
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 32486045  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||    
T  32486044 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatat 32485950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 26336964 - 26336770
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||  ||  |||||||||||||||| |||||||||| |||||    
T  26336964 tgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttg 26336865  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26336864 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatat 26336770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 428 - 623
Target Start/End: Original strand, 19502306 - 19502501
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaa-tcacaagtttgttttagtttgttatgaagtttgttacaagtt 526  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||||||||    
T  19502306 ctgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacat-tttgttttagtttgttatgaagtttgttacaagtt 19502404  T
Q  527 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  19502405 tgttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatat 19502501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 12023289 - 12023446
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12023289 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12023388  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  12023389 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 7099531 - 7099374
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099531 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7099432  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7099431 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 7104100 - 7103943
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 426 - 584
Target Start/End: Original strand, 16794105 - 16794265
Alignment:
Q  426 ttctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagt 525  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16794105 ttctgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagt 16794204  T
Q  526 ttgttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  16794205 ttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 16798669 - 16798826
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16798669 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16798768  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  16798769 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 36632314 - 36632494
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||  ||||||||||||            |||||||||||||    
T  36632314 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgaataatcacac-tttgttttagtt------------tgttacaagtttg 36632399  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36632400 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 36632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 427 - 616
Target Start/End: Original strand, 43384943 - 43385138
Alignment:
Q  427 tctgttagtttgtttt--aattcaagtttagttt----tagtgataatcacaatcagtggttaatcacaagtttg-ttttagtttgttatgaagtttgtt 519  Q
    ||||||||||||||||  ||||||||||||||||    |||||||||||| ||| ||||||||||||||  |||| ||||||||||||||||||||||||    
T  43384943 tctgttagtttgttttttaattcaagtttagtttagtttagtgataatcataattagtggttaatcaca--tttgcttttagtttgttatgaagtttgtt 43385040  T
Q  520 acaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatat-aagctacctcctt 616  Q
    |||||||||||||| ||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43385041 acaagtttgttagaagttagcaaataaaatctagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 37682036 - 37682182
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  37682036 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 37682124  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  37682125 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 429 - 573
Target Start/End: Complemental strand, 40371892 - 40371750
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||  |||||||||||||||||||||| ||||||||||||||    
T  40371892 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagagattaatcacat-tttgttttagtttgttatgaagattgttacaagtttg 40371795  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtg 573  Q
    ||||||| ||| |||||||||||||||||| |||||||| |||||    
T  40371794 ttagaggctagtagataagatctagagtttattacattgtttgtg 40371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 40367757 - 40367579
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||  |||||||||||||||||            ||||||||    
T  40367757 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagagattaatcacat-tttgttttagtttgtta------------caagtttg 40367672  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||    
T  40367671 ttagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgta 40367579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 478 - 612
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  478 tggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttc 577  Q
    ||||||||||||  || |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||    
T  20830437 tggttaatcacat-ttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttc 20830339  T
Q  578 aagcaacttagctagacattgtatataagctacct 612  Q
    |||||||||| ||||||||||||||||||||||||    
T  20830338 aagcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 428 - 584
Target Start/End: Original strand, 37658731 - 37658878
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||           ||||||    
T  37658731 ctgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagttt 37658819  T
Q  528 gttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  37658820 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 10274546 - 10274698
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  10274546 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattaatggttaatcac-atttagattcagtttgttatgaattttgttacaagttag 10274643  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||| |||||  ||||| | ||| ||||||||  | |||||| |||||||||||    
T  10274644 ttagagattagctcataaggt-tagggtttgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 540
Target Start/End: Original strand, 10277204 - 10277313
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  10277204 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagttag 10277301  T
Q  529 ttagaggttagc 540  Q
    |||||| |||||    
T  10277302 ttagagattagc 10277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 478 - 553
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  478 tggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctag 553  Q
    ||||||||||||  || |||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  20808749 tggttaatcacat-ttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 19725577 - 19725630
Alignment:
Q  376 aataggcttcaattgtgtatgccaaaactgatgaactctgataatcttctttct 429  Q
    |||||||||  |||| |||||||||||||||||||||||||||| |||||||||    
T  19725577 aataggctttgattgagtatgccaaaactgatgaactctgataaccttctttct 19725630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 587
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  555 gtttgttacattgcttgtgcttcaagcaactta 587  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 424 - 623
Target Start/End: Original strand, 22901149 - 22901348
Alignment:
Q  424 ctttctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaa 523  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901149 ctttttgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaa 22901248  T
Q  524 gtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901249 gtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 22901348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 429 - 620
Target Start/End: Original strand, 27761397 - 27761586
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  27761397 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttg 27761494  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27761495 ttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 27761586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 427 - 620
Target Start/End: Original strand, 27756844 - 27757035
Alignment:
Q  427 tctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 526  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||    
T  27756844 tctgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcgcat-tctgttttagtttgttatgaagtttgttacaagtt 27756941  T
Q  527 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27756942 tgttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 27757035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 435 - 623
Target Start/End: Complemental strand, 47419729 - 47419543
Alignment:
Q  435 tttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagag 534  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  47419729 tttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttcttagag 47419632  T
Q  535 gttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47419631 gttagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatat 47419543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 429 - 612
Target Start/End: Original strand, 35705634 - 35705815
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtt-atgaagtttgttacaagttt 527  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  35705634 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacat-tttgttttagtttgtttatggagtttgttacaagttt 35705731  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacct 612  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  35705732 gttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacct 35705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 428 - 584
Target Start/End: Complemental strand, 7944794 - 7944636
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7944794 ctgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7944695  T
Q  528 gttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7944694 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 7940240 - 7940083
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7940240 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7940141  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7940140 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 7466669 - 7466488
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||||||||||||||||            ||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacat-tttgttttagtttgtta------------caagtttg 7466583  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7466582 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 7466488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 498 - 622
Target Start/End: Complemental strand, 733756 - 733632
Alignment:
Q  498 ttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacatt 597  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  733756 ttagtttgttatgaaatttgttacaattttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacatt 733657  T
Q  598 gtatataagctacctcctttgtata 622  Q
    |||||||||||||||||||||||||    
T  733656 gtatataagctacctcctttgtata 733632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 603
Target Start/End: Complemental strand, 13828189 - 13828087
Alignment:
Q  501 gtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgta 600  Q
    ||||||| ||||||||||||||||||||||||||  || |  |||| |  ||| || |||||||||||||||||||||||| || || ||||| | ||||    
T  13828189 gtttgttctgaagtttgttacaagtttgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgta 13828090  T
Q  601 tat 603  Q
    |||    
T  13828089 tat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 540
Target Start/End: Original strand, 37355589 - 37355670
Alignment:
Q  459 tagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagc 540  Q
    |||||||||||||| | |||||||||||| |   ||| ||||||||||||||||  ||||||||||||| |||||| |||||    
T  37355589 tagtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattagc 37355670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 31670090 - 31670283
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31670090 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagtttg 31670188  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31670189 ttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 31670283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 429 - 620
Target Start/End: Original strand, 53722007 - 53722196
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  53722007 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 53722104  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  53722105 ttagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgta 53722196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 8892778 - 8892585
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| ||||    
T  8892778 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacat-tttgttttagtttgttatgaagtttgttacaaatttg 8892680  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8892679 ttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatat 8892585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 10317220 - 10317028
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||    
T  10317220 tgttagtttgttttaattcaagtttagttt-agttataatcacaatcagtgattaatcacac-tttgttgtagtttgttatgaagtttgttacaagtttg 10317123  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10317122 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatat 10317028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 27186142 - 27186338
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtt-tgttttagttt-gttatgaagtttgttacaagtt 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  || | ||||||||| ||||||||||||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  527 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  27186242 tgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatat 27186338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 427 - 584
Target Start/End: Original strand, 3770840 - 3770999
Alignment:
Q  427 tctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3770840 tctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 3770939  T
Q  527 tgttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  3770940 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 426 - 584
Target Start/End: Original strand, 44147020 - 44147180
Alignment:
Q  426 ttctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagt 525  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147020 ttctgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagt 44147119  T
Q  526 ttgttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  44147120 ttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 44151558 - 44151715
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44151558 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44151657  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  44151658 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 436 - 623
Target Start/End: Complemental strand, 43683813 - 43683639
Alignment:
Q  436 ttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagagg 535  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||           ||||    
T  43683813 ttgttttaattcaagttta-ttttagtgataatcacaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgtta-----------gagg 43683727  T
Q  536 ttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43683726 ttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatat 43683639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 50628087 - 50627907
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||       ||||  ||| |||    ||||||||||||||||    
T  50628087 tgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcac-------tttt--tttttta----gtttgttacaagtttg 50628002  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50628001 ttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatat 50627907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 527 - 623
Target Start/End: Original strand, 35842843 - 35842939
Alignment:
Q  527 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatat 35842939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 41884925 - 41885076
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  41884925 tgttggtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaa-tttgttacaagttag 41885021  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||| |||||  ||||||| ||| ||||||||| | |||||| |||||||||||    
T  41885022 ttagagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 31359151 - 31359303
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| | || | || |||||| |||||| ||||||||||||| |    
T  31359151 tgttagtttgttttaattcaagtttag-tttaatgataatcacaattagtggttaatcac-atttagattcagtttgctatgaattttgttacaagttag 31359248  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  31359249 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 49274668 - 49274517
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  49274668 tgttagtttgttttaattcaagtttag-tttagtgatgatcataattagtggttaatcac-atttagattcagtttgttatgaa-tttgttacaagttag 49274572  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  49274571 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 31354678 - 31354829
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||||| | || | || || |||||||||| |||||||||||||      
T  31354678 tgttagtttgttttaatttaagtttag-tttagtgataattacaattagtggttaatcac-atttagattcag-ttgttatgaattttgttacaagttac 31354774  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||| | |||||  ||||| | ||| ||||||||| | |||||| | |||||||||    
T  31354775 ttagggattagctcataaggt-tagggtttgttacttagcttgtacgtcaagcaac 31354829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 464 - 613
Target Start/End: Original strand, 53785880 - 53786028
Alignment:
Q  464 ataatcacaatcagtggttaatcacaagt-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgtta 562  Q
    ||||||||| ||||||||||||||||  |  |||||| |||||||| ||| ||||||||||||||||||||   ||||  || | |  ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttat-atagttagggtttgtta 53785977  T
Q  563 cattgcttgtgcttcaagcaacttagctagacattgtatataagctacctc 613  Q
    ||| |||||||||||||||||| || ||||   | ||||||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacctc 53786028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 534
Target Start/End: Complemental strand, 45976263 - 45976222
Alignment:
Q  493 ttgttttagtttgttatgaagtttgttacaagtttgttagag 534  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976263 ttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  457 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtta 508  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcac-actttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 2e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 8315661 - 8315471
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8315661 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 8315563  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8315562 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 8315471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 17096431 - 17096242
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  17096431 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 17096334  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17096333 ttagaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 17096242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 8320199 - 8320010
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  8320199 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacaa-tatgttttagtttgttatgaagtttgttacaagtttg 8320102  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  8320101 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgta 8320010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 428 - 621
Target Start/End: Complemental strand, 17895882 - 17895690
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||| |||||||||||| |||||||||||||||||||    
T  17895882 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacat-tttattttagtttgttctgaagtttgttacaagttt 17895784  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtat 621  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17895783 gttagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgtat 17895690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 27552267 - 27552078
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  27552267 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaggtttg 27552170  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27552169 ttaaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 27552078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 14531945 - 14531752
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||  |||||||||||| |||||||||||||||||| |||||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacat-tttgttttagttcgttatgaagtttgttacaggtttg 14531847  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||||||||    
T  14531846 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatat 14531752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 429 - 621
Target Start/End: Complemental strand, 17887000 - 17886815
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| ||||       |||||||    
T  17887000 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacat-tttgttttagtttgttataaagta------aagtttg 17886908  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtat 621  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17886907 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtat 17886815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 429 - 620
Target Start/End: Original strand, 17779914 - 17780104
Alignment:
Q  429 tgttagtttgtttt-aattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  17779914 tgttagtttgttttgaattcaagtttagttt-agtgataatcacaatcagagattaatcacat-tttgttttagtttgttatgaagtttgttaaaagttt 17780011  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  17780012 gttagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgta 17780104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 429 - 618
Target Start/End: Complemental strand, 27574884 - 27574708
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||            
T  27574884 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgtta-------- 27574795  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttg 618  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27574794 ---gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttg 27574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 468 - 584
Target Start/End: Complemental strand, 6440979 - 6440865
Alignment:
Q  468 tcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattg 567  Q
    ||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| ||||||| |||||  ||||| | ||| ||||||||| | |    
T  6440979 tcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttag 6440882  T
Q  568 cttgtgcttcaagcaac 584  Q
    ||||| |||||||||||    
T  6440881 cttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 492 - 533
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  492 tttgttttagtttgttatgaagtttgttacaagtttgttaga 533  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 534
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  496 ttttagtttgttatgaagtttgttacaagtttgttagag 534  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 533
Target Start/End: Original strand, 17159659 - 17159700
Alignment:
Q  492 tttgttttagtttgttatgaagtttgttacaagtttgttaga 533  Q
    |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159659 tttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 429 - 620
Target Start/End: Original strand, 21847109 - 21847300
Alignment:
Q  429 tgttagtttgtttt-aattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21847109 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagttt 21847207  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21847208 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 21847300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 429 - 620
Target Start/End: Original strand, 21850199 - 21850390
Alignment:
Q  429 tgttagtttgtttt-aattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21850199 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagttt 21850297  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21850298 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 21850390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 9697586 - 9697780
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  ||  |||||||||||||||||||||||||||||||||    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  9697686 ttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatat 9697780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 43547723 - 43547917
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||  ||  |||||||||||||||||||||||||||||||||    
T  43547723 tgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttg 43547822  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  43547823 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatat 43547917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 11004560 - 11004368
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||  |||||||||| ||||||||||| ||||||||||||||    
T  11004560 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgaataatcacat-tttgttttagcttgttatgaagattgttacaagtttg 11004463  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11004462 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatat 11004368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 9105275 - 9105467
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||| |||||||||||||||||| |||||||||||||    
T  9105275 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacat-tttgctttagtttgttatgaagtatgttacaagtttg 9105372  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  9105373 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatat 9105467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 54172081 - 54171924
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54172081 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54171982  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  54171981 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 54167501 - 54167344
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54167501 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54167402  T
Q  529 ttagaggttagcagataa--gatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||||||| || ||||  |   ||||||||||||||||||||||||||||||||||    
T  54167401 ttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 507 - 623
Target Start/End: Original strand, 43554645 - 43554761
Alignment:
Q  507 tatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataag 606  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| || ||||||||||||||  ||||||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  607 ctacctcctttgtatat 623  Q
    ||||||| |||||||||    
T  43554745 ctacctcttttgtatat 43554761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 428 - 584
Target Start/End: Complemental strand, 39399280 - 39399127
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||||||     
T  39399280 ctgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagtta 39399183  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  39399182 gttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 429 - 508
Target Start/End: Original strand, 43554292 - 43554371
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtta 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||  ||  |||||||||||||    
T  43554292 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 612
Target Start/End: Original strand, 755889 - 756012
Alignment:
Q  490 agtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttag 588  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  || |  |||| |   ||| ||||||||||||||||||||||||||| || ||     
T  755889 agtttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaactaataaaaggttagggtttgttacattgcttgtgcttcaagctacctaa 755988  T
Q  589 ctagacattgtatataagctacct 612  Q
    |||||   ||||||||||||||||    
T  755989 ctagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 584
Target Start/End: Complemental strand, 38175896 - 38175790
Alignment:
Q  476 agtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgct 575  Q
    ||||||||||||||  || |||| ||||||||||||| ||||||||||||| ||||||| |||||  ||||||| ||| ||||||||| | |||||| ||    
T  38175896 agtggttaatcacat-ttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtact 38175799  T
Q  576 tcaagcaac 584  Q
    |||||||||    
T  38175798 tcaagcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 534
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  501 gtttgttatgaagtttgttacaagtttgttagag 534  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 2e-91; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 28644562 - 28644754
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  28644562 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 28644659  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28644660 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatat 28644754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 428 - 623
Target Start/End: Original strand, 33071917 - 33072110
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||    
T  33071917 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacac-tttcttttagtttgttatgaagtttgttacaagttt 33072014  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33072015 gttggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 33072110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 42234851 - 42234659
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  42234851 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 42234754  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  42234753 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatat 42234659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 30410486 - 30410297
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||||    
T  30410486 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttaatttgttatgaagtttgttacaagtttg 30410389  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  30410388 ttagaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgta 30410297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 197841 - 197684
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197841 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 197742  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  197741 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 202359 - 202202
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202359 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 202260  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  202259 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 312678 - 312521
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312678 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 312579  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  312578 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 317196 - 317039
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  317196 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 317097  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  317096 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 38757003 - 38757183
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||            |||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtt------------tgttacaagtttg 38757088  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  38757089 ttagaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatat 38757183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 494 - 620
Target Start/End: Complemental strand, 30405914 - 30405788
Alignment:
Q  494 tgttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  30405914 tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctaga 30405815  T
Q  594 cattgtatataagctacctcctttgta 620  Q
     ||||||||||||||||||||||||||    
T  30405814 tattgtatataagctacctcctttgta 30405788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 43807640 - 43807485
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  43807640 tgttagcttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttg 43807543  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  43807542 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 43812199 - 43812044
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  43812199 tgttagcttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttg 43812102  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  43812101 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 429 - 531
Target Start/End: Original strand, 41949802 - 41949902
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||  | |||||||||||||| |||||||||||||||||| |    
T  41949802 tgttagtttcttttaattcaagcttagttt-agtgataatcacaatcagtgattaatcacac-tctgttttagtttgttttgaagtttgttacaagttgg 41949899  T
Q  529 tta 531  Q
    |||    
T  41949900 tta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 429 - 527
Target Start/End: Original strand, 41945339 - 41945434
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| | |||||||||||||||||  ||||| |||||||||||    
T  41945339 tgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatgattaatcac-actttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 609
Target Start/End: Complemental strand, 27435314 - 27435169
Alignment:
Q  458 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagt-ttgttacaagtttgttagaggttagcagataagatctagagt 556  Q
    |||||||||||| || | ||||||||||||||   |||||||||||||||||||  | |||||||||||||| |      ||||| ||| ||  ||| ||    
T  27435314 ttagtgataatctcacttagtggttaatcacattattgttttagtttgttatgagttattgttacaagtttgat------tagcacata-gagttagggt 27435222  T
Q  557 ttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagcta 609  Q
    ||||||||| |||||||||||||||||| ||  |||| |||||||||||||||    
T  27435221 ttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 472
Target Start/End: Complemental strand, 30405960 - 30405918
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcaca 472  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  30405960 tgttagtttgttttaattcaagtttag-tttagtgataatcaca 30405918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 12999622 - 12999429
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 12999524  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12999523 ttagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatat 12999429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 429 - 620
Target Start/End: Original strand, 8055392 - 8055581
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||| ||||||||    
T  8055392 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctattttagtttgttatgaagtttgttgcaagtttg 8055489  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8055490 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 8055581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 428 - 620
Target Start/End: Original strand, 8050838 - 8051028
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||    
T  8050838 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctattttagtttgttatgaagtttgttacaagttt 8050935  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  8050936 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgta 8051028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 36670503 - 36670660
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36670503 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36670602  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  36670603 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 36675051 - 36675208
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36675051 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36675150  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  36675151 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 6463583 - 6463406
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||            ||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgtta------------caagtttg 6463498  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  6463497 ttagaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgta 6463406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 429 - 593
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||| ||||||||||||||            |||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattac-actttattttagtttgttat------------aagtttg 13271045  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 593  Q
    ||||||||||| | |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271044 ttagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 35950595 - 35950443
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  35950595 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttaggttcagtttgttatgaattttgttacaagttag 35950498  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||| |||||   |||| | ||| ||||||||| | |||||| |||||||||||    
T  35950497 ttagagattagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaac 35950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 41093824 - 41093976
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||| |||| |||||||  | || | || ||||||||||||| |||||||||| || |    
T  41093824 tgttggtttgttttaattcaaatttagttt-agtgataatcacaattagtgattaatca-tatttagattcagtttgttatgaattttgttacaaattag 41093921  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  41093922 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 584
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  496 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 9e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 427 - 620
Target Start/End: Original strand, 39793829 - 39794020
Alignment:
Q  427 tctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 526  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||    
T  39793829 tctgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatctcat-tctgttttagtttgttatgaagtttgttacaagtt 39793926  T
Q  527 tgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgta 620  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39793927 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 39794020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 16588635 - 16588443
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  16588635 tgttagtttgttttaattcaagtttagttt-agtgataatcacaataagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 16588538  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  16588537 ttagaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatat 16588443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 429 - 623
Target Start/End: Complemental strand, 43591978 - 43591786
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||||||||  |||    
T  43591978 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcgcac-tttattttagtttgttatgaagtttgttacaatattg 43591881  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43591880 ttagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatat 43591786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 428 - 623
Target Start/End: Original strand, 26311521 - 26311702
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||            ||||||||||||    
T  26311521 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtt------------tgttacaagttt 26311606  T
Q  528 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  26311607 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatat 26311702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 429 - 623
Target Start/End: Original strand, 26316013 - 26316193
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||            |||||||||||||    
T  26316013 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtt------------tgttacaagtttg 26316098  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatat 623  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  26316099 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatat 26316193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 10504436 - 10504588
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| | || | || ||||||||||||| ||||||||||||| |    
T  10504436 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtgattaatcac-atttagattcagtttgttatgaattttgttacaagttag 10504533  T
Q  529 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  10504534 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 587
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  555 gtttgttacattgcttgtgcttcaagcaactta 587  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 428 - 584
Target Start/End: Complemental strand, 49603 - 49445
Alignment:
Q  428 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49603 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 49504  T
Q  528 gttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    |||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  49503 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 45022 - 44865
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45022 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44923  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  44922 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 2980 - 3137
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2980 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3079  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  3080 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 429 - 584
Target Start/End: Original strand, 7506 - 7662
Alignment:
Q  429 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  7506 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttg 7604  T
Q  529 ttagaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 584  Q
    ||||||||||||| ||||| |   ||||||||||||||||||||||| ||||||||||    
T  7605 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 20637 - 20728
Alignment:
Q  21 accataccttataccgtcagtacggccaatatccttctcaattcttttgagtgcagacaataattcatgtggcccgagtttagtaacagatctta 115  Q
    |||||||||||||||||||||| ||||||  ||||   |||||| |||||||  ||||||||||||||| |||| || ||||||| ||| |||||    
T  20637 accataccttataccgtcagtatggccaaactcct---caattcgtttgagtctagacaataattcatgaggcctgaatttagtagcagctctta 20728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 533
Target Start/End: Complemental strand, 60302 - 60201
Alignment:
Q  431 ttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgtt 530  Q
    |||||||||||||||||||||| | |||  |  ||||||||||| |||| |||||||||  |   |||||||||||||| || |||||||| ||||||||    
T  60302 ttagtttgttttaattcaagtt-actttgtgatataatcacaattagtgattaatcacatttaatttttagtttgttataaattttgttaccagtttgtt 60204  T
Q  531 aga 533  Q
    |||    
T  60203 aga 60201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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