View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_59 (Length: 293)
Name: NF16632_high_59
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 38 - 284
Target Start/End: Complemental strand, 1029130 - 1028884
Alignment:
| Q |
38 |
ttgaagcatctgcattttggaaaacatagatggctttgtgagcgttgctggtcattttttcatatcttgttactttatgaaaatacaagcatatataggt |
137 |
Q |
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| T |
1029130 |
ttgaagcatctgcattgtggaaaacatagatggctttgtgagcgttgctggtcattttttcatatcttgttactttatgaaaatataagcatatataggt |
1029031 |
T |
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| Q |
138 |
ttttcaccttatgcttgttattgtgaataattttctatgttaatctttatcttgctttctgcatttagatgttggggtgtaatacaaggggctattcttt |
237 |
Q |
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| T |
1029030 |
ttttcaccttatgcttgttattgtgaataattttctatgttaatctttatcttgctttctgcatttagatgttggggtgtaatacaaggggctattcttt |
1028931 |
T |
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| Q |
238 |
tacacgtgctttgttaggcattgctgccgatgaacttcacctctgtg |
284 |
Q |
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| T |
1028930 |
tacacgtgctttgttaggcattgctgccgatgaacttcacctctgtg |
1028884 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35445999 - 35446032
Alignment:
| Q |
1 |
ttatgactatattgcatgtttagcatgacattga |
34 |
Q |
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| T |
35445999 |
ttatgactatattgcatgtttagtatgacattga |
35446032 |
T |
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