View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_6 (Length: 618)
Name: NF16632_high_6
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 10 - 440
Target Start/End: Complemental strand, 12926378 - 12925954
Alignment:
| Q |
10 |
gtcgaagaatatagttgagtcgatgaacactccatagtaaatttcctt--cttatatacttatccatttttnnnnnnnnnnn--tcacaaaagtagnnnn |
105 |
Q |
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| T |
12926378 |
gtcgaaaaacatagttgagtcgatgaacactccatagtaaatttccttttcttatatactcatccttttttttaaaaaaaaagattacaaaattagtttt |
12926279 |
T |
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| Q |
106 |
nnngacaagaagatcagaaatgtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaatttc |
205 |
Q |
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| T |
12926278 |
tttgacaagaagatcagaaaagtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaatttc |
12926179 |
T |
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| Q |
206 |
ttttagaggtgaattaaaaatcaattattatctcacaatattccagaacattcgggctataaatacagctgaaattgaaatccacaaatcgttgaacccg |
305 |
Q |
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| T |
12926178 |
ttttagaggtgaattaaaaatcaattattaactcacaatattc----------gggctataaatacagctgaaattgaaatccacaaatcgttgaacccg |
12926089 |
T |
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| Q |
306 |
ccaaatgaaagagcaacaaacaccaaccaaactctctgcacctcgctccgcagagaatcgcaccgcaagatccaaaaactttccgtcgaagaaatccaga |
405 |
Q |
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| T |
12926088 |
ccaaatgaaagagcaacaaacaccaaccaaactctctgcacctcgctccgcagagaatcgcaccgcaagatccaatgactttccgtcgaagaaatccaga |
12925989 |
T |
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| Q |
406 |
aaggcacgcacatccaccgattcctaaacttctca |
440 |
Q |
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| T |
12925988 |
aaggcacgcacattcaccgattcctaaacttctca |
12925954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 527 - 600
Target Start/End: Complemental strand, 12925874 - 12925801
Alignment:
| Q |
527 |
gatctcaaacaggagcgtgaattcttcatctgcttcgttttctgaagaatcggttgatttatcgctgatttctg |
600 |
Q |
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| T |
12925874 |
gatctcaaacaagagcgtgaattcttcatctgcttcgttttctgaagaatcggttgatttatcgctgatttctg |
12925801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 115 - 340
Target Start/End: Original strand, 30789517 - 30789739
Alignment:
| Q |
115 |
aagatcagaaatgtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaattt--cttttaga |
212 |
Q |
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| T |
30789517 |
aagatcacaaaagtaattgttagaagataaattagtttccct---aaaaaaataccgataaatttcttttttagaggtttgaattaatttttcttttagg |
30789613 |
T |
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| Q |
213 |
ggtgaattaaaaatcaattattatctcacaatattccagaacattcgggctataaatacagctgaaattgaaatccacaaatcgttgaacccgccaaatg |
312 |
Q |
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| T |
30789614 |
ggtgaattaaaaaaaaattatc--ctcacaatattagagaacattccagctataaatacagtcaaaattgaaatcagcaaaacgtttaaactgccaaacg |
30789711 |
T |
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| Q |
313 |
aaagagcaacaaacaccaaccaaactct |
340 |
Q |
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| T |
30789712 |
aaagagcaacaaacaccaaccaaactct |
30789739 |
T |
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Back To:
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