View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_64 (Length: 281)
Name: NF16632_high_64
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_64 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 38788677 - 38788931
Alignment:
| Q |
9 |
agcagagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaag |
108 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38788677 |
agcaaagaagaagggtttgtaggttcgtactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaag |
38788776 |
T |
|
| Q |
109 |
atgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaatcctttaaggtttgaactcaatcagaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||||||||| |
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| T |
38788777 |
atgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgtccattaccgccacgtgttcataatccttggaggtttgaactcaatcagaa |
38788876 |
T |
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| Q |
209 |
agttgatgtgtttgataacgatggttggtgggtaggggaaatcgctagcgagaag |
263 |
Q |
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| T |
38788877 |
agttgatgtgtttgataacgatggttggtgggtaggggaaatcgctagcgagaag |
38788931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 38743730 - 38743476
Alignment:
| Q |
9 |
agcagagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaag |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38743730 |
agcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaag |
38743631 |
T |
|
| Q |
109 |
atgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaatcctttaaggtttgaactcaatcagaa |
208 |
Q |
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| T |
38743630 |
atgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgtccattaccgccacgtgttcgtaatccttcgaggtttgaactcaatcagaa |
38743531 |
T |
|
| Q |
209 |
agttgatgtgtttgataacgatggttggtgggtaggggaaatcgctagcgagaag |
263 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
38743530 |
agttgacgtgtttgataacgatggttggtgggtagggaaaattgctagcgagaag |
38743476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 38782514 - 38782759
Alignment:
| Q |
18 |
gaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaat |
117 |
Q |
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| T |
38782514 |
gaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagt |
38782613 |
T |
|
| Q |
118 |
cggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaatcctttaaggtttgaactcaatcagaaagttgatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| | |||| |||||||||| ||||||||||| |
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| T |
38782614 |
cggaacttcttatggaaacactttttccaaaagatcttcgtccaataccaccacatgttcgtaatcctttgaagtttaaactcaatcaaaaagttgatgt |
38782713 |
T |
|
| Q |
218 |
gtttgataacgatggttggtgggtaggggaaatcgctagcgagaag |
263 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38782714 |
atttgataacgatggttggtgggtaggtaaaatcgctagcgagaag |
38782759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 30963141 - 30962892
Alignment:
| Q |
14 |
agaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgac |
113 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
30963141 |
agaagaagggtttgtaggttcatattttgaagccacaattgtttcatgccttgagagtggaaaatatgtgattcgttacaagaatcttcttaaagacgac |
30963042 |
T |
|
| Q |
114 |
gaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaatcctttaaggtttgaactcaatcagaaagttg |
213 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||||| |||| || ||||||||||| ||||||| | |||| |||||||||| ||||||| |
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| T |
30963041 |
gaatctcaacttcttatggaaacacttttatcaaaagatcttcgtccatcacagccacgtgttcgaaatccttctaagtttcaactcaatcaaaaagttg |
30962942 |
T |
|
| Q |
214 |
atgtgtttgataacgatggttggtgggtaggggaaatcgctagcgagaag |
263 |
Q |
| |
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|||| ||| |||| |||||||||||||||||| |||| |||||||||||| |
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| T |
30962941 |
atgttttttataaagatggttggtgggtagggaaaattgctagcgagaag |
30962892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 30897474 - 30897561
Alignment:
| Q |
164 |
accaccacgtgttcgtaatcctttaaggtttgaactcaatcagaaagttgatgtgtttgataacgatggttggtgggtaggggaaatc |
251 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||| || |||| |||||||||||||||||| ||||| |
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| T |
30897474 |
accaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatc |
30897561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 2914702 - 2914871
Alignment:
| Q |
90 |
tacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaatcctttaa |
189 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||| | ||| | |||||||| |||||||||| | | | |||||||||| ||||||| |||| | |
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| T |
2914702 |
tacaagaaccttcttaaagatgatgagtctgaacttctcacggagatactttttctaaaagatctttgtctagtaccaccacgagttcgtaggccttcta |
2914801 |
T |
|
| Q |
190 |
ggtttgaactcaatcagaaagttgatgtgtttgataacgatggttggtgggtaggggaaatcgctagcga |
259 |
Q |
| |
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||| ||||||| ||||||||| |||| ||||| |||||||| |||||| |||| |||||| ||||||| |
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| T |
2914802 |
agttcaaactcaaccagaaagtttatgtttttgacaacgatgggtggtggataggagaaatcactagcga |
2914871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 5963739 - 5963683
Alignment:
| Q |
9 |
agcagagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtctt |
65 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
5963739 |
agcaaagaagaagggtttgtgggttcatactttgaagctacaattgtttcgtgtctt |
5963683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 5963594 - 5963484
Alignment:
| Q |
153 |
cttcgcccattaccaccacgtgttcgtaatcctttaaggtttgaactcaatcagaaagttgatgtgtttgataacgatggttggtgggtaggggaaatcg |
252 |
Q |
| |
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||||| |||||||| ||||||||||||| |||| |||| |||||||||| |||||||||| ||||| ||||||||||||||| ||||| ||||| |
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| T |
5963594 |
cttcgtccattaccgccacgtgttcgtagtcctcgtgagtttcaactcaatcaaaaagttgatgcttttgacaacgatggttggtggttagggcaaatca |
5963495 |
T |
|
| Q |
253 |
ctagcgagaag |
263 |
Q |
| |
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|||| |||||| |
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|
| T |
5963494 |
ctagtgagaag |
5963484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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