View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_67 (Length: 257)
Name: NF16632_high_67
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6135360 - 6135131
Alignment:
| Q |
1 |
tgtaccaaattgtattactactcttattataaataaaatgaactaagtcttgttgcattnnnnnnnnn----ctttataaaattattatattccattgga |
96 |
Q |
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| T |
6135360 |
tgtaccaaattgtattactactcctattataaataaaatgaactaagtct-gttgcattaaaaaaaaaaaaactttataaaattattatattccattgga |
6135262 |
T |
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| Q |
97 |
gccttaaaagaacttcttggtttggaactcccaaagttttgggcagcttacttttaagatgcttacttgttctatgttccagttggtcaaaacatttctt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6135261 |
gccttaaaagaacttcttggtttggaactcccaaagttttgggc---------------tgcttacttgttctatgttccagttggtcaaaacatttctt |
6135177 |
T |
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| Q |
197 |
gggcaaaaagaatttggagtataaaaataagtcctagcaagttcat |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6135176 |
gggcaaaaagaatttggagtataaaaataagtcctagcaagttcat |
6135131 |
T |
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