View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_7 (Length: 601)

Name: NF16632_high_7
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_7
NF16632_high_7
[»] chr8 (3 HSPs)
chr8 (1-351)||(6495095-6495453)
chr8 (502-590)||(14935680-14935768)
chr8 (444-500)||(6494990-6495048)
[»] chr4 (3 HSPs)
chr4 (502-590)||(1062025-1062113)
chr4 (502-568)||(31606015-31606081)
chr4 (502-568)||(31954085-31954151)
[»] chr5 (2 HSPs)
chr5 (506-590)||(34024300-34024384)
chr5 (502-568)||(12633055-12633121)
[»] chr6 (4 HSPs)
chr6 (508-590)||(34977280-34977362)
chr6 (502-568)||(26125103-26125170)
chr6 (502-568)||(25571870-25571937)
chr6 (502-568)||(26006338-26006405)
[»] chr1 (2 HSPs)
chr1 (502-585)||(20087557-20087640)
chr1 (502-568)||(45291677-45291743)
[»] chr2 (1 HSPs)
chr2 (502-568)||(23362923-23362990)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 6495453 - 6495095
Alignment:
Q  1 attttgtaatgcatcactatttattataatctgccaacctaaactttcggtaagatattgctgtatactaaaatatattttggtacaataatgaaatcat 100  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6495453 attttgtaatgcatcactgtttattataatctgccaaccttaactttcggtaagatattgctgtatactaaaatatattttggtaccataatgaaatcat 6495354  T
Q  101 gtcagtggagtctgcttgaag----agccacggcatccattaattctacctagatcatacttcctccctt-cctttataagcacttgttgcatatttcac 195  Q
    ||||||||| ||||||||| |    |||||||||||||||| ||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||    
T  6495353 gtcagtggaatctgcttgatgagcaagccacggcatccattgattcttcctagattatacttcctcccttgcttttataagcacttgttgcatatttcac 6495254  T
Q  196 tttttaggaagattggttgt---gtaattagtttatacaatatactttttgtg-taactattatttataaaattacttttctgtacacatgactgattca 291  Q
    ||||||||||||||||||||   ||||||||| |||| |||||| ||| |||| ||||||||||| || ||||||||||| | |||||| ||||||| ||    
T  6495253 tttttaggaagattggttgtgtagtaattagtatatataatatattttgtgtgttaactattattaat-aaattacttttgtatacacacgactgatcca 6495155  T
Q  292 ataatttttaaaagcaagtgacgtttaaagcaatgttgaatatacgagcctcttcagttt 351  Q
    |||||||||||||| || | |||||||||| ||||||||||||| |||||||||| ||||    
T  6495154 ataatttttaaaagtaaatcacgtttaaagtaatgttgaatatatgagcctcttcggttt 6495095  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 502 - 590
Target Start/End: Original strand, 14935680 - 14935768
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 590  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  14935680 atcttaataatatacaaatgggaagaaacaaatggcaaaaaaatttgtaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 14935768  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 6495048 - 6494990
Alignment:
Q  444 agttatttctcgaaaccttaaaaacacaaaaa--tattattcaagagtgatctctcgaa 500  Q
    ||||||||||| ||||||| |||||| |||||  |||||||| ||||||||||||||||    
T  6495048 agttatttctcaaaacctttaaaacataaaaaaatattattcgagagtgatctctcgaa 6494990  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 502 - 590
Target Start/End: Complemental strand, 1062113 - 1062025
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 590  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1062113 atcttaataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 1062025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 31606015 - 31606081
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 568  Q
    |||||||||||||||||||| ||| | | |||||| |||||| |||||  |||||||||||||||||    
T  31606015 atcttaataatatacaaatgtgaaaacataaatagaaaaaaaatttgcttcaatccaatgtgtcaaa 31606081  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 568
Target Start/End: Complemental strand, 31954151 - 31954085
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 568  Q
    |||||||||||||||||||| ||||  |||||||| |||   |||||||||| |||||| |||||||    
T  31954151 atcttaataatatacaaatgtgaagccacaaataggaaatttttttgcaccagtccaatatgtcaaa 31954085  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 506 - 590
Target Start/End: Original strand, 34024300 - 34024384
Alignment:
Q  506 taataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 590  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34024300 taataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 34024384  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 568
Target Start/End: Complemental strand, 12633121 - 12633055
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 568  Q
    |||||||||||||||||||| ||||| |||||||| |||||| |||||  ||||| |||||||||||    
T  12633121 atcttaataatatacaaatgtgaagacacaaataggaaaaaaatttgcttcaatctaatgtgtcaaa 12633055  T

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Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 508 - 590
Target Start/End: Original strand, 34977280 - 34977362
Alignment:
Q  508 ataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 590  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34977280 ataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 34977362  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 26125103 - 26125170
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaatagtaaaa-aattttgcaccaatccaatgtgtcaaa 568  Q
    |||||||||||||||||||| ||||  |||||||| |||| |||||||| ||||||||||||||||||    
T  26125103 atcttaataatatacaaatgtgaagctacaaataggaaaaaaattttgccccaatccaatgtgtcaaa 26125170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 25571870 - 25571937
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 568  Q
    |||||||||||||||||||| ||||  ||||||| | |||||| ||||| ||||||||||||||||||    
T  25571870 atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa 25571937  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 26006338 - 26006405
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 568  Q
    |||||||||||||||||||| ||||  ||||||| | |||||| ||||| ||||||||||||||||||    
T  26006338 atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa 26006405  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 502 - 585
Target Start/End: Original strand, 20087557 - 20087640
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcat 585  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  20087557 atcttaataatatacaaatgtgaagaaacaaataggaaaaaaatttgcaccaatccaatgtgtcacatcctcaagcctcttcat 20087640  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 568
Target Start/End: Complemental strand, 45291743 - 45291677
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 568  Q
    |||||||||||||||||||| ||||| |||||||| ||||||| ||||  |||||||||||||||||    
T  45291743 atcttaataatatacaaatgtgaagacacaaataggaaaaaatattgcttcaatccaatgtgtcaaa 45291677  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 23362923 - 23362990
Alignment:
Q  502 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 568  Q
    ||||||||||||||||||||  |||| ||||||| | ||||||  |||||||||||||||||||||||    
T  23362923 atcttaataatatacaaatgtaaagacacaaataggaaaaaaaaattgcaccaatccaatgtgtcaaa 23362990  T

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