View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_72 (Length: 245)

Name: NF16632_high_72
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_72
NF16632_high_72
[»] chr8 (2 HSPs)
chr8 (121-226)||(36588325-36588430)
chr8 (1-33)||(36588518-36588550)
[»] chr5 (5 HSPs)
chr5 (121-226)||(3936681-3936786)
chr5 (184-226)||(3937975-3938017)
chr5 (1-33)||(3936874-3936906)
chr5 (1-33)||(25253864-25253896)
chr5 (1-33)||(25317655-25317687)
[»] chr4 (5 HSPs)
chr4 (121-226)||(45618387-45618492)
chr4 (184-225)||(45619645-45619686)
chr4 (151-210)||(32698112-32698171)
chr4 (162-226)||(32699206-32699270)
chr4 (1-33)||(45618580-45618612)
[»] chr7 (4 HSPs)
chr7 (123-210)||(5610276-5610363)
chr7 (173-210)||(30512165-30512202)
chr7 (173-226)||(36748300-36748353)
chr7 (162-226)||(31847091-31847155)
[»] chr6 (3 HSPs)
chr6 (123-210)||(1170558-1170644)
chr6 (160-210)||(1171543-1171593)
chr6 (141-226)||(17516265-17516350)
[»] chr3 (1 HSPs)
chr3 (141-226)||(52402994-52403079)
[»] chr1 (3 HSPs)
chr1 (137-226)||(24422618-24422707)
chr1 (124-226)||(24427223-24427325)
chr1 (182-226)||(30722219-30722263)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 36588430 - 36588325
Alignment:
Q  121 ggcaattgccatttgtatgccacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36588430 ggcaattgccatttgtatgccacatgtacatttttgcatagtcagcaactaacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggac 36588331  T
Q  221 catttt 226  Q
    ||||||    
T  36588330 catttt 36588325  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36588550 - 36588518
Alignment:
Q  1 aagaagaagagaggaagagaaagatgttgattc 33  Q
    ||||||||||||||| |||||||||||||||||    
T  36588550 aagaagaagagaggacgagaaagatgttgattc 36588518  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 3936786 - 3936681
Alignment:
Q  121 ggcaattgccatttgtatgccacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3936786 ggcaattgccatttgtatgccacatgtacatttttgcatagtcagcaactaacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccaggaac 3936687  T
Q  221 catttt 226  Q
    ||||||    
T  3936686 catttt 3936681  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 3937975 - 3938017
Alignment:
Q  184 aaatgtgataaatcagcaaaaaagtgggtccagggaccatttt 226  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  3937975 aaatgtgacaaatcagcaaaaaagtgggtctagggaccatttt 3938017  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3936906 - 3936874
Alignment:
Q  1 aagaagaagagaggaagagaaagatgttgattc 33  Q
    |||||||||||||||||||||||||| ||||||    
T  3936906 aagaagaagagaggaagagaaagatgctgattc 3936874  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25253864 - 25253896
Alignment:
Q  1 aagaagaagagaggaagagaaagatgttgattc 33  Q
    ||||||||||||||||||||| |||||||||||    
T  25253864 aagaagaagagaggaagagaacgatgttgattc 25253896  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25317655 - 25317687
Alignment:
Q  1 aagaagaagagaggaagagaaagatgttgattc 33  Q
    ||||||||||||||||||||| |||||||||||    
T  25317655 aagaagaagagaggaagagaacgatgttgattc 25317687  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 45618492 - 45618387
Alignment:
Q  121 ggcaattgccatttgtatgccacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggac 220  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45618492 ggcaattgccatttgtatgtcacatgtacatttttgcatagtcagcagctgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccaaggac 45618393  T
Q  221 catttt 226  Q
    | ||||    
T  45618392 cgtttt 45618387  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 45619645 - 45619686
Alignment:
Q  184 aaatgtgataaatcagcaaaaaagtgggtccagggaccattt 225  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  45619645 aaatgtgataaatcagcaaaaaagtgggtctagggaccattt 45619686  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 32698171 - 32698112
Alignment:
Q  151 tttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgg 210  Q
    |||||||| ||||||||||   |||||||| |||||||||| ||||||||||||||||||    
T  32698171 tttttgcacagtcagcaaggaccacataagcaaaaatgtgacaaatcagcaaaaaagtgg 32698112  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 32699206 - 32699270
Alignment:
Q  162 tcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggaccatttt 226  Q
    ||||||| |||||| || ||| |||||||| ||||||||||||||||||| | |||||| |||||    
T  32699206 tcagcaactgacacgtaggtagaaatgtgacaaatcagcaaaaaagtgggcctagggactatttt 32699270  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45618612 - 45618580
Alignment:
Q  1 aagaagaagagaggaagagaaagatgttgattc 33  Q
    |||||||||||||||||||||||||| ||||||    
T  45618612 aagaagaagagaggaagagaaagatgctgattc 45618580  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 5610363 - 5610276
Alignment:
Q  123 caattgccatttgtatgccacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgg 210  Q
    ||||||||| |||| |||||  ||||| |||||||| |||||| | | | |||||||| |||||||||| ||||||||||||||||||    
T  5610363 caattgccacttgtgtgccatgtgtacgtttttgcacagtcagtatgggccacataagcaaaaatgtgacaaatcagcaaaaaagtgg 5610276  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 30512202 - 30512165
Alignment:
Q  173 cacataagtaaaaatgtgataaatcagcaaaaaagtgg 210  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  30512202 cacataagcaaaaatgtgataaatcagctaaaaagtgg 30512165  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 36748353 - 36748300
Alignment:
Q  173 cacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggaccatttt 226  Q
    |||||| | ||||||| || |||||||||||||||||||||||| ||| |||||    
T  36748353 cacataggcaaaaatgagacaaatcagcaaaaaagtgggtccagagactatttt 36748300  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 31847155 - 31847091
Alignment:
Q  162 tcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggaccatttt 226  Q
    |||||||||| |||||||| ||||||| | | ||||| |||  |||||||||||||||| |||||    
T  31847155 tcagcaagtgccacataagcaaaaatgcgcttaatcatcaagtaagtgggtccagggactatttt 31847091  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 1170644 - 1170558
Alignment:
Q  123 caattgccatttgtatgccacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgg 210  Q
    ||||||||| |||| |||||  ||||| ||||||||  | ||||||| | ||||||||||||||||||| ||| ||||||||||||||    
T  1170644 caattgccacttgtgtgccatctgtacgtttttgcacgg-cagcaagggccacataagtaaaaatgtgacaaaacagcaaaaaagtgg 1170558  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 1171543 - 1171593
Alignment:
Q  160 agtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgg 210  Q
    ||||||||| |||||| || ||| |||||||| ||||||||||||||||||    
T  1171543 agtcagcaactgacacgtaggtagaaatgtgacaaatcagcaaaaaagtgg 1171593  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 17516350 - 17516265
Alignment:
Q  141 cacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggaccatttt 226  Q
    ||||||||||  |||||||||||||  | || |||||| | | |||||||| |||||| ||| |||||||||||| |||| |||||    
T  17516350 cacatgtacaagtttgcatagtcagttaatgccacatatgcacaaatgtgacaaatcatcaagaaagtgggtccaaggactatttt 17516265  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 52402994 - 52403079
Alignment:
Q  141 cacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggaccatttt 226  Q
    ||||||||||  |||||||||||||| | || |||||| | | |||||||| |||||| ||| |||||||||||| |||| |||||    
T  52402994 cacatgtacaagtttgcatagtcagctaatgccacatatgcacaaatgtgacaaatcatcaagaaagtgggtccaaggactatttt 52403079  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 24422707 - 24422618
Alignment:
Q  137 atgccacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggaccatttt 226  Q
    ||||||||||||||| |||||||||||||||  || |||||| | | ||||| || |||| ||||| |||||||||| | |||| |||||    
T  24422707 atgccacatgtacatgtttgcatagtcagcatatgccacataggcagaaatgagacaaattagcaagaaagtgggtctaaggactatttt 24422618  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 24427223 - 24427325
Alignment:
Q  124 aattgccatttgtatgccacatgtacatttttgcatagtcagcaagtgacacataagtaaaaatgtgataaatcagcaaaaaagtgggtccagggaccat 223  Q
    ||||||||  || ||||||||||||||  |||||||||||||||  |  || ||| | ||||||| || |||||| ||| ||||||||| ||||||| ||    
T  24427223 aattgccaactggatgccacatgtacaggtttgcatagtcagcatatttcaaataggcaaaaatgagacaaatcaccaagaaagtgggttcagggactat 24427322  T
Q  224 ttt 226  Q
    |||    
T  24427323 ttt 24427325  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 30722263 - 30722219
Alignment:
Q  182 aaaaatgtgataaatcagcaaaaaagtgggtccagggaccatttt 226  Q
    ||||||| || |||||||||| ||||||||||||||||| |||||    
T  30722263 aaaaatgagacaaatcagcaagaaagtgggtccagggactatttt 30722219  T

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