View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_high_75 (Length: 239)

Name: NF16632_high_75
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_high_75
NF16632_high_75
[»] chr3 (9 HSPs)
chr3 (142-221)||(33551738-33551817)
chr3 (17-66)||(33551895-33551944)
chr3 (17-56)||(8392521-8392560)
chr3 (17-66)||(32641390-32641439)
chr3 (20-56)||(8391692-8391728)
chr3 (20-56)||(45981708-45981744)
chr3 (17-54)||(41881345-41881382)
chr3 (23-56)||(45982528-45982561)
chr3 (147-195)||(41881483-41881531)
[»] chr8 (6 HSPs)
chr8 (17-66)||(35919285-35919334)
chr8 (17-56)||(35505830-35505869)
chr8 (20-56)||(35506652-35506688)
chr8 (17-64)||(45448188-45448235)
chr8 (157-211)||(44690184-44690238)
chr8 (20-48)||(35750378-35750406)
[»] chr1 (6 HSPs)
chr1 (18-66)||(28361083-28361131)
chr1 (17-56)||(46651665-46651704)
chr1 (158-212)||(9419662-9419716)
chr1 (20-56)||(46652503-46652539)
chr1 (17-64)||(46604752-46604799)
chr1 (147-191)||(28360956-28361000)
[»] chr2 (6 HSPs)
chr2 (17-66)||(31558261-31558310)
chr2 (17-56)||(20588175-20588214)
chr2 (20-56)||(20587340-20587376)
chr2 (147-211)||(31558114-31558178)
chr2 (143-195)||(44097177-44097229)
chr2 (158-221)||(31559399-31559462)
[»] chr4 (8 HSPs)
chr4 (17-66)||(4241365-4241414)
chr4 (17-56)||(39928238-39928277)
chr4 (17-66)||(4284090-4284139)
chr4 (20-53)||(39929076-39929109)
chr4 (30-64)||(50094216-50094250)
chr4 (147-224)||(4241497-4241573)
chr4 (147-224)||(4284222-4284298)
chr4 (28-56)||(46253277-46253305)
[»] scaffold0472 (2 HSPs)
scaffold0472 (17-56)||(9330-9369)
scaffold0472 (20-56)||(10168-10204)
[»] chr7 (10 HSPs)
chr7 (20-56)||(28848855-28848891)
chr7 (23-56)||(25009204-25009237)
chr7 (23-56)||(43545649-43545682)
chr7 (20-53)||(43546452-43546485)
chr7 (20-56)||(25008384-25008420)
chr7 (17-56)||(28849690-28849730)
chr7 (17-54)||(11670172-11670209)
chr7 (31-64)||(39787875-39787908)
chr7 (147-195)||(11670022-11670070)
chr7 (159-211)||(20207842-20207894)
[»] chr6 (2 HSPs)
chr6 (17-56)||(9410215-9410254)
chr6 (20-56)||(31994960-31994997)
[»] chr5 (3 HSPs)
chr5 (17-66)||(12890546-12890596)
chr5 (147-212)||(12890398-12890463)
chr5 (20-56)||(42775721-42775757)
[»] scaffold0369 (1 HSPs)
scaffold0369 (23-56)||(8004-8037)
[»] scaffold0524 (2 HSPs)
scaffold0524 (20-56)||(7979-8015)
scaffold0524 (25-56)||(8796-8827)
[»] scaffold0018 (1 HSPs)
scaffold0018 (20-56)||(193892-193928)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 33551817 - 33551738
Alignment:
Q  142 atccttcaaatctagtcacttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgacatttgtacctc 221  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||    
T  33551817 atccttcaaatctagtcacttatcatctctcatgccacataagcgtgttttgccgactcagcaagtgacatgtgtgcctc 33551738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 33551944 - 33551895
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33551944 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 33551895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 8392521 - 8392560
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8392521 agaaattggggttggagatgaagaagaaaaaatagaggga 8392560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 32641439 - 32641390
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 66  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  32641439 agaaattggggatggagacgaagaaggaaaaatagagggatgaagaaggt 32641390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 8391728 - 8391692
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  8391728 aattggggttggagatgaagaagaaaaaatagaggga 8391692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 45981744 - 45981708
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  45981744 aattggggttggagatgaagaagaaaaaatagaggga 45981708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 41881345 - 41881382
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagg 54  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  41881345 agaaattggagttggagacgaagaagaaaaaatagagg 41881382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 45982528 - 45982561
Alignment:
Q  23 tggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||| ||||||||    
T  45982528 tggggttggagatgaagaagaaaaagtagaggga 45982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 41881483 - 41881531
Alignment:
Q  147 tcaaatctagtcacttatcatttctcatgtcacataagcgtgttttgcc 195  Q
    ||||||||||||||||||||| | |||   |||||||||||||||||||    
T  41881483 tcaaatctagtcacttatcatctgtcagtacacataagcgtgttttgcc 41881531  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 35919334 - 35919285
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35919334 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 35919285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 35505869 - 35505830
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35505869 agaaattggggttggagatgaagaagaaaaaatagaggga 35505830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 35506652 - 35506688
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||| |||||||||||||    
T  35506652 aattggggttggagatgaagaaggaaaaatagaggga 35506688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 45448188 - 45448235
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaag 64  Q
    ||||| || ||||||||||||||||||||||| |||| ||||||||||    
T  45448188 agaaaatgaggttggagatgaagaagaaaaaacagagagatgaagaag 45448235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 44690238 - 44690184
Alignment:
Q  157 tcacttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgaca 211  Q
    ||||||||||| ||||||| ||||||||| ||||||||| |||||  ||||||||    
T  44690238 tcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgaca 44690184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 35750406 - 35750378
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaa 48  Q
    |||||||||||||||||||||||||||||    
T  35750406 aattggggttggagatgaagaagaaaaaa 35750378  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 28361131 - 28361083
Alignment:
Q  18 gaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28361131 gaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 28361083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 46651704 - 46651665
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46651704 agaaattggggttggagatgaagaagaaaaaatagaggga 46651665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 9419662 - 9419716
Alignment:
Q  158 cacttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgacat 212  Q
    |||||||||| | ||||| ||||||||||||||||||| ||||||||||||||||    
T  9419662 cacttatcatatttcatgccacataagcgtgttttgccaactcagaaagtgacat 9419716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 46652503 - 46652539
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  46652503 aattggggttggagatgaagaagaaaaaatagaggga 46652539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 46604799 - 46604752
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaag 64  Q
    ||||| || ||||||||||||||||||||||| |||| ||||||||||    
T  46604799 agaaaatgaggttggagatgaagaagaaaaaacagagagatgaagaag 46604752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 28361000 - 28360956
Alignment:
Q  147 tcaaatctagtcacttatcatttctcatgtcacataagcgtgttt 191  Q
    ||||||||||||||||||||| || |||| |||||||| ||||||    
T  28361000 tcaaatctagtcacttatcatctcgcatgccacataagtgtgttt 28360956  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 31558310 - 31558261
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31558310 agaaattggagttggagatgaagaagaaaaaatagagggatgaagaaggt 31558261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 20588175 - 20588214
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20588175 agaaattggggttggagatgaagaagaaaaaatagaggga 20588214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 20587376 - 20587340
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  20587376 aattggggttggagatgaagaagaaaaaatagaggga 20587340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 31558178 - 31558114
Alignment:
Q  147 tcaaatctagtcacttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgaca 211  Q
    |||||||||||||||||| || ||||||| ||||||||| ||||||||| |||||  ||||||||    
T  31558178 tcaaatctagtcacttattatctctcatgccacataagcatgttttgccaactcaacaagtgaca 31558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 44097177 - 44097229
Alignment:
Q  143 tccttcaaatctagtcacttatcatttctcatgtcacataagcgtgttttgcc 195  Q
    ||||||||||||||||||||||||| | |||   |||||||||||||||||||    
T  44097177 tccttcaaatctagtcacttatcatctgtcagtacacataagcgtgttttgcc 44097229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 31559399 - 31559462
Alignment:
Q  158 cacttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgacatttgtacctc 221  Q
    |||||||||| ||||||| ||||||| ||||||||||| |||||  ||||||||| ||| ||||    
T  31559399 cacttatcatctctcatgccacataaacgtgttttgccaactcatcaagtgacatgtgtgcctc 31559462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 4241365 - 4241414
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 66  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  4241365 agaaattggggttggagataaagaagaaaaaacagagggatgaagaaggt 4241414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 39928277 - 39928238
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39928277 agaaattggggttggagatgaagaagaaaaaatagaggga 39928238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 4284090 - 4284139
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagggatgaagaaggt 66  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||||||    
T  4284090 agaaattggggttgaagataaagaagaaaaaacagagggatgaagaaggt 4284139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 39929076 - 39929109
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagag 53  Q
    ||||||||||||||||||||||||||||||||||    
T  39929076 aattggggttggagatgaagaagaaaaaatagag 39929109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 50094216 - 50094250
Alignment:
Q  30 ggagatgaagaagaaaaaatagagggatgaagaag 64  Q
    |||||||||||||||||||||||| ||||||||||    
T  50094216 ggagatgaagaagaaaaaatagagagatgaagaag 50094250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 4241497 - 4241573
Alignment:
Q  147 tcaaatctagtcacttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgacatttgtacctctgt 224  Q
    ||||||||||||||||||||| | ||||| |||||| | ||| |||||| |||||| ||||||||  ||| |||||||    
T  4241497 tcaaatctagtcacttatcatctttcatg-cacataggtgtgctttgccaactcagcaagtgacacatgtgcctctgt 4241573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 4284222 - 4284298
Alignment:
Q  147 tcaaatctagtcacttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgacatttgtacctctgt 224  Q
    ||||||||||||||||||||| | ||||| |||||||| ||  |||||| |||||| ||||||||  ||| |||||||    
T  4284222 tcaaatctagtcacttatcatctttcatg-cacataagtgtactttgccaactcagcaagtgacacatgtgcctctgt 4284298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 46253305 - 46253277
Alignment:
Q  28 ttggagatgaagaagaaaaaatagaggga 56  Q
    |||||||||||||||||||||||||||||    
T  46253305 ttggagatgaagaagaaaaaatagaggga 46253277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 9369 - 9330
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9369 agaaattggggttggagatgaagaagaaaaaatagaggga 9330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 10168 - 10204
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10168 aattggggttgaagatgaagaagaaaaaatagaggga 10204  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 28848891 - 28848855
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  28848891 aattggggttggagatgaagaagaaaaaatagaggga 28848855  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 25009204 - 25009237
Alignment:
Q  23 tggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||    
T  25009204 tggggttggagatgaagaagaaaaaatagaggga 25009237  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 43545682 - 43545649
Alignment:
Q  23 tggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||    
T  43545682 tggggttggagatgaagaagaaaaaatagaggga 43545649  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 43546452 - 43546485
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagag 53  Q
    ||||||||||||||||||||||||||||||||||    
T  43546452 aattggggttggagatgaagaagaaaaaatagag 43546485  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 25008420 - 25008384
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25008420 aattggggttgaagatgaagaagaaaaaatagaggga 25008384  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 28849690 - 28849730
Alignment:
Q  17 agaaattggggttggagatgaagaag-aaaaaatagaggga 56  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  28849690 agaaattggggttggagatgaagaagaaaaaaatagaggga 28849730  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11670209 - 11670172
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagagg 54  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  11670209 agaaattggagttggagatgaagaagaaaaaacagagg 11670172  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 39787875 - 39787908
Alignment:
Q  31 gagatgaagaagaaaaaatagagggatgaagaag 64  Q
    |||||||||||||||||| |||||||||||||||    
T  39787875 gagatgaagaagaaaaaacagagggatgaagaag 39787908  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 11670070 - 11670022
Alignment:
Q  147 tcaaatctagtcacttatcatttctcatgtcacataagcgtgttttgcc 195  Q
    ||||||||||||||||||||| | |||   |||||||||||||||||||    
T  11670070 tcaaatctagtcacttatcatctgtcagtacacataagcgtgttttgcc 11670022  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 20207894 - 20207842
Alignment:
Q  159 acttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgaca 211  Q
    |||||||||  ||||||  |||||||||||||||||| |||||| ||||||||    
T  20207894 acttatcatcgctcatgcgacataagcgtgttttgccaactcagcaagtgaca 20207842  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 9410254 - 9410215
Alignment:
Q  17 agaaattggggttggagatgaagaagaaaaaatagaggga 56  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  9410254 agaaattgggattggagatgaagaagaaaaaatagaggga 9410215  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 31994997 - 31994960
Alignment:
Q  20 aattggggttggagatgaagaagaa-aaaatagaggga 56  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31994997 aattggggttggagatgaagaagaaaaaaatagaggga 31994960  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 12890596 - 12890546
Alignment:
Q  17 agaaattggggttggagatgaagaagaa-aaaatagagggatgaagaaggt 66  Q
    |||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  12890596 agaaattggggttggagatgaagaagaaaaaaatagaagcatgaagaaggt 12890546  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 12890463 - 12890398
Alignment:
Q  147 tcaaatctagtcacttatcatttctcatgtcacataagcgtgttttgccgactcagaaagtgacat 212  Q
    ||||||||||||| ||||||| | |||||  |||||||||||||||||| |||| | |||||||||    
T  12890463 tcaaatctagtcatttatcatctttcatgcaacataagcgtgttttgccaactcggcaagtgacat 12890398  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 42775757 - 42775721
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42775757 aattggggttggatatgaagaagaaaaaatagaggga 42775721  T

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Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 8004 - 8037
Alignment:
Q  23 tggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||||    
T  8004 tggggttggagatgaagaagaaaaaatagaggga 8037  T

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Target: scaffold0524 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 8015 - 7979
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||| |||||||||    
T  8015 aattggggttggagatgaagaagaaaacatagaggga 7979  T

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Target: scaffold0524; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 8796 - 8827
Alignment:
Q  25 gggttggagatgaagaagaaaaaatagaggga 56  Q
    ||||||||||||||||||||||||||||||||    
T  8796 gggttggagatgaagaagaaaaaatagaggga 8827  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 193928 - 193892
Alignment:
Q  20 aattggggttggagatgaagaagaaaaaatagaggga 56  Q
    |||||||||||||||||||||||||| |||| |||||    
T  193928 aattggggttggagatgaagaagaaataatataggga 193892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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