View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_76 (Length: 238)
Name: NF16632_high_76
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_76 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 29197001 - 29197141
Alignment:
| Q |
73 |
aatattatctaatcttttgattacaaagtctactctttttacctatataattaatataagagactagcaaatccaaatcattttgttagaaac-aaaaaa |
171 |
Q |
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| T |
29197001 |
aatattatctaatcttttgattacaaagtctactctttttacctatataattaatataagagactagataatccaaatcattttgttagaaacaaaaaaa |
29197100 |
T |
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| Q |
172 |
ttccaaatccaggagactagaagagtaatagtttacgtgct |
212 |
Q |
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| T |
29197101 |
ttctaaatccaggagactagaagagtagtagtttacgtgct |
29197141 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 29196120 - 29196188
Alignment:
| Q |
10 |
aataagtttctgtaacagataatttgaaaattatagttaatgttttaattacaaagatgagataatatt |
78 |
Q |
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| T |
29196120 |
aataagtttctgtaatagataatttgaaaattatggttaatgttttaattacaaagatgagataatatt |
29196188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29196049 - 29196091
Alignment:
| Q |
1 |
agttaatgtaataagtttctgtaacagataatttgaaaattat |
43 |
Q |
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| T |
29196049 |
agttaatgtaataagtttctgtaacagataattttaaaattat |
29196091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 12286935 - 12287008
Alignment:
| Q |
73 |
aatattatctaatcttttgattacaaagtctactctttttacctatataattaatataagagactagcaaatccaaatc |
151 |
Q |
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| T |
12286935 |
aatattatctaatcttttgattacaaagtctactatttttacttatat-----atatagcagactagcaaatccaaatc |
12287008 |
T |
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