View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_81 (Length: 235)
Name: NF16632_high_81
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_81 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: scaffold0425 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10344 - 10113
Alignment:
| Q |
1 |
ggggaaataaaagaaaaataacaaatatttgactaagagatatattcggaccttccaaacagcgtaat------aacccttgtgtgtgggaaatttgttc |
94 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
10344 |
ggggaaataaaagaaaaataacaaatatttgacaaagagatatgttcggaccttccaaacagtgtaattgtaataacccttgtgtgtgggaaatttgttc |
10245 |
T |
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| Q |
95 |
accttaattcagatattcacaaagagtcaaagtatgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaattaactttcattgctgcca |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||| |||| |
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| T |
10244 |
accttaattcagatattcacaaagagtcaaagtatgtgggacccataacttggtcttgctagcactatgtggcggtgc-aattaaccttcattcctgctt |
10146 |
T |
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| Q |
193 |
aatgtggtcaatctccacattcgggatgtgact |
225 |
Q |
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| T |
10145 |
aatgttgtcaatgcacacattcgggatgtgact |
10113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 6524183 - 6523993
Alignment:
| Q |
1 |
ggggaaataaaagaaaaataacaaatatttgactaagagatatattcggaccttccaaacagcgtaataacccttgtgtgtgggaaatttgttcacctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |
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| T |
6524183 |
ggggaaataaaagaaaaataacaaatatttgactaagagatatattcggacctta-attcagcgtaataacccttgtgtgtgggaaatttgttcacctga |
6524085 |
T |
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| Q |
101 |
attcagatattcacaaagagtcaaagtatgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaattaactttcattgctgcc |
191 |
Q |
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| T |
6524084 |
attcagatattcacaaagagtcaaagtatgtgggacccataacttggtcttgctagcactatgtggcggtgc-aattaaccttcattcctgcc |
6523993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 6842138 - 6841958
Alignment:
| Q |
1 |
ggggaaataaaagaaaaataacaaatatttgactaagagatatat--tcggaccttccaaacagcgtaataacccttgtgtgtgggaaatttgttcacct |
98 |
Q |
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| T |
6842138 |
ggggaaataaaagaaaaataataaatatttgacaaagagatatatgttcggaccttccaaacagtgtaataacccttgtgtgtgggaaatttgttcacct |
6842039 |
T |
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| Q |
99 |
taattca---gatattcacaaagagtcaaagtatgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaat |
174 |
Q |
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| T |
6842038 |
taattcagatgatattcacaaagagtcaaagtatgtgggacccataacttggtcttgctagcactatgtggcggtgcaaat |
6841958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 66 - 225
Target Start/End: Original strand, 6944795 - 6944950
Alignment:
| Q |
66 |
aataacccttgtgtgtgggaaatttgttcaccttaattcagatattcacaaagagtcaaagtatgtgggacccataacttggtcttgctagcac--tgtg |
163 |
Q |
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| T |
6944795 |
aataacccttgtgtgtgggaaatttgttcaccttaattca-atattc----agagtcaaagtatgtgggacccataacttgttcttgctagcactatgtg |
6944889 |
T |
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| Q |
164 |
gcgatgcaaattaactttcattgctgccaaatgtggtcaatctccacattcgggatgtgact |
225 |
Q |
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||| ||| ||||||| |||||| || | |||||| ||||||| |||||||||||||||||| |
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| T |
6944890 |
gcggtgc-aattaaccttcattccttctaaatgtcgtcaatccacacattcgggatgtgact |
6944950 |
T |
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