View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_high_84 (Length: 225)
Name: NF16632_high_84
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_high_84 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 1244308 - 1244152
Alignment:
| Q |
55 |
taataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggtagtgactaagataagtgtgtatggt |
154 |
Q |
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| T |
1244308 |
taataatcttaatgtattcatatccttttaatttactcttctacacgtcttttttgacttaagcttcttaatggtagtgactaagataagtgtgtatggt |
1244209 |
T |
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| Q |
155 |
tattttaagttaatttatgcaacatatgacatgcctcatcaatatttctagaattat |
211 |
Q |
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| T |
1244208 |
tattttaagttaatttatgcaacatatgacatgcctcatcaatatttctagaattat |
1244152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 1248628 - 1248459
Alignment:
| Q |
33 |
tcttctcctacatacatatatctaataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggtagt |
132 |
Q |
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| T |
1248628 |
tcttttcctacatacatatatctaataatcttaatgtatccttatccttttaatttacccttctacacattttttt----------tacttaatggctgt |
1248539 |
T |
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| Q |
133 |
gactaagataagtgtgtatggttattttaagttaatttatgcaa-catatgacatgcctcatcaatatttctagaattat |
211 |
Q |
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| T |
1248538 |
gactaagataattatgtatggtgattttaagttattttatccaaccatatgacatgcttcatgaatgtttttggaattat |
1248459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 1228798 - 1228723
Alignment:
| Q |
54 |
ctaataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggt |
129 |
Q |
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| T |
1228798 |
ctaatattcttaatgtatccttatccttttactttactcatccccacttttttttttacttaagcttcttaatggt |
1228723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 1234409 - 1234369
Alignment:
| Q |
46 |
acatatatctaataatcttaatgtattcatatccttttaat |
86 |
Q |
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| T |
1234409 |
acatatatctaataatcttaatctatccttatccttttaat |
1234369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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