View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_low_1 (Length: 944)
Name: NF16632_low_1
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 884; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 884; E-Value: 0
Query Start/End: Original strand, 9 - 929
Target Start/End: Complemental strand, 37223534 - 37222614
Alignment:
| Q |
9 |
acatcatcaagaacaaatattcaaaatgtgtttataataatatcacctgaattatgtagatgttggtttaagtttccattttccatgtattcatacacaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37223534 |
acatcatcaagaacaaatattcaaaatgtgtttataataatatcacctgaattatgtagatgttggtttaagtttccattttccatgtattcatacacaa |
37223435 |
T |
|
| Q |
109 |
ggaatagaaatccctcaacacaatatccaatcaagtgtacctatatggacataacaatagatagatataggttacaaaattactgatacattaaagaata |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37223434 |
ggaatagaaatccctcaacacaatatccaatcaagtgtacctatatgaacataacaatagatagatataggttacaaaattactgatacattaaagaata |
37223335 |
T |
|
| Q |
209 |
taatataaacagcaaagttactgaagaaagttaataaagcaacaattacttttataataaaaaaggtaaaacaaaacatgctttaccaggttccggtgat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37223334 |
taatataaacagcaaagttactgaagaaagttaataaagcaacaattacttttataataaaaaaggtaaaacaaaacatgctttaccaggttccggtgat |
37223235 |
T |
|
| Q |
309 |
gaacacttgttaacactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtgtaattaaagacagcttact |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37223234 |
gaacacttgttaacactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtgtaattaaagacagcttact |
37223135 |
T |
|
| Q |
409 |
taacaaaagaacataaaatttgaaataggcacatggaatttattgttagcaacaagaaaaaattattccaaatactatgcttgttagaatgagtttaaaa |
508 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37223134 |
taacaaacgaacataaaatttgaaataggcacatggaatttattgttagcaacaagaaaaaattattccaaatactatgcttgttagaatgagtttaaaa |
37223035 |
T |
|
| Q |
509 |
caaatttaatgaattctggtacatagcacctttcctgtatatggtatgattttatacatacaattgaaagtgagagaaattacgaggaatcaatagtaat |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37223034 |
caaatttaatgaattctggtacatagcacctttcctgtatatggtatgattttatacatacaattgaaagtgagagaaattacgaggaatcaatagtaat |
37222935 |
T |
|
| Q |
609 |
tttagaaccacctctgagggaatcaatagtaatttcagactcttaagactgatttcaaagtaaaactaacaatgctacgattacaaacctggcctctcaa |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37222934 |
tttagaaccacctctgagggaatcaatagtaatttcagactcttatgactgatttcaaagtaaaactaacaatgctacgattacaaacctggcctctcaa |
37222835 |
T |
|
| Q |
709 |
ctctccatagtagacctcaccaaaaccaccttgaccaannnnnnnagccaaactgaagttatctgtagcattggcgagttcttcgtacgaaaactctggt |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37222834 |
ctctccatagtagacctcaccaaaaccaccttgaccaatttttttagccaaactgaagttatctgtagcattggcgagttcttcgtacgaaaactctggt |
37222735 |
T |
|
| Q |
809 |
gatttgtctaaccaaatatatctggatccagtatcaccattggtatctttatcaactgcaagagttataaataaataagcagaagaccagtttcaagttg |
908 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37222734 |
gatttgtctaaccaaatatatctggatccagtatcaccattggtatctttatcaactgcgagagttataaataaataagcagaagaccagtttcaagttg |
37222635 |
T |
|
| Q |
909 |
aacttcattcactgtattttg |
929 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37222634 |
aacttcattcactgtattttg |
37222614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 43 - 631
Target Start/End: Complemental strand, 37232444 - 37231842
Alignment:
| Q |
43 |
taataatatcacctgaattatgtagatgttggtttaagtttccattttccatgtattcatacacaaggaatagaaatccctcaacacaatatccaatcaa |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37232444 |
taataatatcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacaagaaatagaaatccctcaacacaatatccaatcaa |
37232345 |
T |
|
| Q |
143 |
gtgtacctatatggacataacaatagatagatataggttacaaaattactgatacattaaagaatataatataaacagcaaagttactgaagaaagttaa |
242 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
37232344 |
gtgtacctatatggacataacaacagatagatataggttacaaaattactattacattagagaatatagtataaacaacaaagttactgaagaaagttaa |
37232245 |
T |
|
| Q |
243 |
taaagcaacaattacttttataataaaaaaggtaaaacaaaac------atgctt-------taccaggttccggtgatgaacacttgttaacactttca |
329 |
Q |
| |
|
||||| |||||| | |||||||| |||||| ||||| |||| ||| || ||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
37232244 |
taaagaaacaatcatttttataaagaaaaagctaaaagaaaaatgttatatgtttgaaaatttaccaggtttaagtgacgaacacttgttaagactttca |
37232145 |
T |
|
| Q |
330 |
gttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtgtaattaaagacagcttacttaacaaaagaacataaaattt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||| || || |
|
|
| T |
37232144 |
gttcagaaagaaattctcttgttgcttgcgtcttcatcttcttgattgcaactttctgtgtaattaaagatcgcttacttaatgaaataacatataagtt |
37232045 |
T |
|
| Q |
430 |
gaaataggcacatggaatttattgttagcaacaagaaaaaattattccaaatactatgcttgttagaatgagtttaaaacaaatttaatgaattctggta |
529 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||| | ||| ||||||||||||||||||| |||||| |||||||| ||||| |||||| |
|
|
| T |
37232044 |
gaaataggcacgtggaatggattgttacaaacaagaaaaagctcttcactatactatgcttgttagaataagtttataacaaattcgatgaaatctggtg |
37231945 |
T |
|
| Q |
530 |
catagcacctttcctgtatatggtatgattttatacatacaattgaaagtgagagaaattac-gaggaatcaatagtaattttagaaccacctctgaggg |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| | |||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
37231944 |
catagcacctttcctgtatatggtatgattttatatataccattgaaaatgagagaaattacagtggaatcaatagtcattttagaaccgcctttgaggg |
37231845 |
T |
|
| Q |
629 |
aat |
631 |
Q |
| |
|
||| |
|
|
| T |
37231844 |
aat |
37231842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 37217834 - 37217579
Alignment:
| Q |
9 |
acatcatcaagaacaaatattcaaaatgtgtttataataatatcacctgaattatgtagatgttggtttaagtttccattttccatgtattcatacacaa |
108 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37217834 |
acatcatcatgaacaaatattcaaa-tgtgtttataataatatcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacaa |
37217736 |
T |
|
| Q |
109 |
ggaatagaaatccctcaacacaatatccaatcaagtgtacct----atatggacataacaatagatagatataggttacaaaattactgatacattaaag |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37217735 |
ggaatagaaatccctcgacacaatatccaatcaagtgtacctatatatatggacataaccacatatagatataggttacaaaattactgttacattaaag |
37217636 |
T |
|
| Q |
205 |
aatataatataaacagcaaagttactgaagaaagttaataaagcaacaattactttt |
261 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37217635 |
aatatagtataaacaccaaagttactgaagaaagttaataatgcaacaattactttt |
37217579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 290 - 591
Target Start/End: Complemental strand, 37217253 - 37216944
Alignment:
| Q |
290 |
tttaccaggttccggtgatgaacacttgttaacactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtg |
389 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37217253 |
tttaccaggttccagtgatgaacacttgttaaaactttcagttcagagagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtg |
37217154 |
T |
|
| Q |
390 |
taattaaagacagcttacttaacaaaagaacataaaatttgaaataggcacatggaatttattgttagcaacaagaaaaaattattc-caa-------at |
481 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||| || ||||||||||||||||||| | | || |
|
|
| T |
37217153 |
taattaaagacaccttacttaacaaaaaaacataaaatttgaaacaggcacatggaatggattgataccaacaagaaaaaattattctctatactatcat |
37217054 |
T |
|
| Q |
482 |
actatgcttgttagaatgagtttaaaacaaatttaatgaattctggtacatagcacctttcctgtatatggtatgattttatacatacaattgaaagtga |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||| | |||| ||| ||| || |
|
|
| T |
37217053 |
actatgcttgttagaatgagtttaaaacaaatttaatgaattctggttcatagcacctttcctgcatttggaatgattttaaatataccattcaaaaaga |
37216954 |
T |
|
| Q |
582 |
gagaaattac |
591 |
Q |
| |
|
||||||||| |
|
|
| T |
37216953 |
aagaaattac |
37216944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 664 - 912
Target Start/End: Complemental strand, 37216874 - 37216625
Alignment:
| Q |
664 |
caaagtaaaactaacaatgctacgattacaaacctggcctctcaactctccatagtagacctcaccaaaaccaccttgaccaannnnnnnagccaaactg |
763 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37216874 |
caaagcaaaactaacaatgctatgattacaaacctggcctctcagctctccatagtagacctcaccaaaaccaccttgaccaatttttttagccaaactg |
37216775 |
T |
|
| Q |
764 |
aagttatctgtagcattggcgagttcttcgtacgaaaactctggtgatttgtctaaccaaatatatctggatccagtatcaccattggtatctttatcaa |
863 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||| || | |||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
37216774 |
aagttatctgttgcattggctagttcttcgtacgaaaactctggtgatttatccacccaaatatatttggatccattatcatcattggtatctttatcaa |
37216675 |
T |
|
| Q |
864 |
ctgcaagagttat-aaataaataagcagaagaccagtttcaagttgaact |
912 |
Q |
| |
|
||| |||||||| |||||||||||||||| | ||||||||||| |||| |
|
|
| T |
37216674 |
ctgtgagagttataaaataaataagcagaattcgagtttcaagttaaact |
37216625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 664 - 862
Target Start/End: Complemental strand, 37231796 - 37231598
Alignment:
| Q |
664 |
caaagtaaaactaacaatgctacgattacaaacctggcctctcaactctccatagtagacctcaccaaaaccaccttgaccaannnnnnnagccaaactg |
763 |
Q |
| |
|
||||||||||||||||| | || ||| |||||||| ||||| || | |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37231796 |
caaagtaaaactaacaaagttatgataacaaaccttgcctcccagcactccatagtagacctcaccaaaaccaccttgaccaatttttttagccaaactg |
37231697 |
T |
|
| Q |
764 |
aagttatctgtagcattggcgagttcttcgtacgaaaactctggtgatttgtctaaccaaatatatctggatccagtatcaccattggtatctttatca |
862 |
Q |
| |
|
||||| |||||||||||||| ||| ||| ||| || |||| |||||||||||| | | | |||||| |||||| |||||||| || | ||||||||||| |
|
|
| T |
37231696 |
aagttctctgtagcattggctagtactttgtatgagaactttggtgatttgtccaccaatatatatttggatctagtatcactatagctatctttatca |
37231598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 37385518 - 37385631
Alignment:
| Q |
40 |
ttataataatatcacctgaattatgtagatgttggtttaagtttccattttccatgtattcatacacaaggaatagaaatccctcaacacaatatccaat |
139 |
Q |
| |
|
||||||| || |||||||||| |||||||| |||| ||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
37385518 |
ttataattatgtcacctgaatcatgtagattttggcttaagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaat |
37385617 |
T |
|
| Q |
140 |
caagtgtacctata |
153 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37385618 |
caagtgtacctata |
37385631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 664 - 816
Target Start/End: Original strand, 37385920 - 37386072
Alignment:
| Q |
664 |
caaagtaaaactaacaatgctacgattacaaacctggcctctcaactctccatagtagacctcaccaaaaccaccttgaccaannnnnnnagccaaactg |
763 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||| ||| |
|
|
| T |
37385920 |
caaagtaaaactaacaatgctatgataacaaaccttgcctctcggctctccatagtagacttcaccaaaaccaccttgaccaattttgttagccaagctg |
37386019 |
T |
|
| Q |
764 |
aagttatctgtagcattggcgagttcttcgtacgaaaactctggtgatttgtc |
816 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| ||||| | ||||||||||| |
|
|
| T |
37386020 |
aatttatcagtagcattggctagttcttcgtatgaaaatttaggtgatttgtc |
37386072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 37385720 - 37385829
Alignment:
| Q |
290 |
tttaccaggttccggtgatgaacacttgttaacactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtg |
389 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
37385720 |
tttaccaggttgcagtggtgaactcttgttaagattttcagttcagcaagaaattcccttgttgcttgcatcttcatcttttttattgcagttttctgtg |
37385819 |
T |
|
| Q |
390 |
taattaaaga |
399 |
Q |
| |
|
||||| |||| |
|
|
| T |
37385820 |
taattgaaga |
37385829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 37198334 - 37198245
Alignment:
| Q |
64 |
gtagatgttggtttaagtttccattttccatgtattcatacacaaggaatagaaatccctcaacacaatatccaatcaagtgtacctata |
153 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||||| |||||||| || ||||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
37198334 |
gtagatgttggcctaagtttccattatcaatgtattcatagacaaggaaaagggatccctcaacacagtatccgatcaagcgtacctata |
37198245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 37203321 - 37203257
Alignment:
| Q |
78 |
aagtttccattttccatgtattcatacacaaggaatagaaatccctcaacacaatatccaatcaa |
142 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
37203321 |
aagtttccattgtcaatgtattcatagacaaggaagagaaaaccttcaacacaatatccaatcaa |
37203257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 395
Target Start/End: Complemental strand, 37198096 - 37197992
Alignment:
| Q |
291 |
ttaccaggttccggtgatgaacacttgttaacactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtgt |
390 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| |||| |||| |||||||||| ||||||||| ||| | |||||| || |||||| ||||||||| |
|
|
| T |
37198096 |
ttaccaggttcacgtgatgaacacgcgtcaacaccttcaactcagcaagaaattcttttgttgctttcatgtccatcttttttattgcagctttctgtgt |
37197997 |
T |
|
| Q |
391 |
aatta |
395 |
Q |
| |
|
||||| |
|
|
| T |
37197996 |
aatta |
37197992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 669 - 805
Target Start/End: Complemental strand, 37197819 - 37197683
Alignment:
| Q |
669 |
taaaactaacaatgctacgattacaaacctggcctctcaactctccatagtagacctcaccaaaaccaccttgaccaannnnnnnagccaaactgaagtt |
768 |
Q |
| |
|
|||| |||||||||||| |||||||||||| ||| ||| |||| | || ||||| ||||| |||||||||||||| | ||||| ||||||| |
|
|
| T |
37197819 |
taaacctaacaatgctatgattacaaacctcgccattcagctctgcgtaatagacttcaccgaaaccaccttgaccgattttgttagccatgttgaagtt |
37197720 |
T |
|
| Q |
769 |
atctgtagcattggcgagttcttcgtacgaaaactct |
805 |
Q |
| |
|
|| ||| |||||||| |||||||| || ||||||||| |
|
|
| T |
37197719 |
atttgtggcattggctagttcttcatatgaaaactct |
37197683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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