View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_10 (Length: 570)

Name: NF16632_low_10
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_10
NF16632_low_10
[»] chr7 (4 HSPs)
chr7 (310-552)||(29895639-29895884)
chr7 (100-183)||(29895934-29896017)
chr7 (514-552)||(29476162-29476200)
chr7 (349-386)||(29459713-29459750)
[»] chr1 (2 HSPs)
chr1 (305-386)||(10219353-10219434)
chr1 (291-432)||(17563803-17563942)
[»] chr4 (1 HSPs)
chr4 (305-386)||(3558092-3558172)
[»] chr6 (1 HSPs)
chr6 (518-546)||(6947667-6947695)
[»] chr5 (1 HSPs)
chr5 (518-546)||(18964671-18964699)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 310 - 552
Target Start/End: Complemental strand, 29895884 - 29895639
Alignment:
Q  310 cataaaatagaatattcacacaattttattattaggaagacaacatatacaaattaacatagattcaaacaagtaaaatgtggaagaggacttactttta 409  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| |    
T  29895884 cataaaatagaatattcacacaattttattattatgaagacaacatatacaaattaacataaattcaaacaagaaaaatgtgggagaggacttactttca 29895785  T
Q  410 aacaggtgaaactaagctttcaacgtaacaattgggcgggtaccaatttat---accatagtcagtactataattggtaaaagtactacttggagtagtt 506  Q
    || ||||||||| ||||||||||||||||||||||| ||||||||| ||||   ||||  |||| |||||| |   |||||||||||||||| |||||||    
T  29895784 aataggtgaaaccaagctttcaacgtaacaattgggagggtaccaacttataccaccacggtcaatactatcaccagtaaaagtactacttgcagtagtt 29895685  T
Q  507 tgtattcgctctactctattatctctccaattatagagaagtggat 552  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||    
T  29895684 tgtattagctctactttattatctctccaattatagagaagtggat 29895639  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 29896017 - 29895934
Alignment:
Q  100 aaataagactaaacccatcctaagggaggttaaaatattatttcttgaaaacatgtgaacaagagagagtgaaattccttaaga 183  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  29896017 aaataagactaaacccatcctaagggagataaaaatattctttcttgaaaacatgtgaacaagagagattgaaattccttaaga 29895934  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 552
Target Start/End: Original strand, 29476162 - 29476200
Alignment:
Q  514 gctctactctattatctctccaattatagagaagtggat 552  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  29476162 gctctactctattttctctccaattatagagaattggat 29476200  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 386
Target Start/End: Original strand, 29459713 - 29459750
Alignment:
Q  349 acaacatatacaaattaacatagattcaaacaagtaaa 386  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  29459713 acaacatatacaaatgaacataaattcaaacaagtaaa 29459750  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 10219434 - 10219353
Alignment:
Q  305 gcaatcataaaatagaatattcacacaattttattattaggaagacaacatatacaaattaacatagattcaaacaagtaaa 386  Q
    |||||||||||| || ||||||| || | | |||||||| ||| ||||||||||||||| ||| || |||||||||||||||    
T  10219434 gcaatcataaaaaagcatattcaaaccaatctattattatgaaaacaacatatacaaatgaacctaaattcaaacaagtaaa 10219353  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 432
Target Start/End: Original strand, 17563803 - 17563942
Alignment:
Q  291 tacaatcaatgtaggcaatcataaaatagaatattcacacaattttattattaggaagacaacatatacaaattaacatagattcaaacaagtaaaatgt 390  Q
    |||||||||||   ||||||| |||| | ||||||||||||| |  |||||||||  || || | |||||||| |||||||||| |||||||||||  ||    
T  17563803 tacaatcaatgctagcaatcagaaaaaataatattcacacaagtg-attattagg--gaaaaaaaatacaaataaacatagattaaaacaagtaaaccgt 17563899  T
Q  391 ggaagagg-acttacttttaaacaggtgaaactaagctttcaa 432  Q
    |||||||| ||||||||| ||| |   | ||||||||||||||    
T  17563900 ggaagaggaacttactttcaaaaaataggaactaagctttcaa 17563942  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 3558172 - 3558092
Alignment:
Q  305 gcaatcataaaatagaatattcacacaattttattattaggaagacaacatatacaaattaacatagattcaaacaagtaaa 386  Q
    ||||||||||||  ||||||||||||||| | |||| || ||| |  ||||||||||||| ||||| |||||||||||||||    
T  3558172 gcaatcataaaaatgaatattcacacaatct-attaatatgaaaaatacatatacaaatttacataaattcaaacaagtaaa 3558092  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 546
Target Start/End: Original strand, 6947667 - 6947695
Alignment:
Q  518 tactctattatctctccaattatagagaa 546  Q
    |||||||||||||||||||||||||||||    
T  6947667 tactctattatctctccaattatagagaa 6947695  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 546
Target Start/End: Original strand, 18964671 - 18964699
Alignment:
Q  518 tactctattatctctccaattatagagaa 546  Q
    |||||||||||||||||||||||||||||    
T  18964671 tactctattatctctccaattatagagaa 18964699  T

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