View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_11 (Length: 569)
Name: NF16632_low_11
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 252 - 555
Target Start/End: Original strand, 36774125 - 36774431
Alignment:
| Q |
252 |
gccctgttcagaagttgaaatagggtccatgatcaaactagaggaactaattaagatgaaaataatgtatcatatactacttcacataaaccagtttaac |
351 |
Q |
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| T |
36774125 |
gccctgttcagaagttgaaatagggtccatgatcaaactagaggaactaattaagatgaaaataatgtatcatatactacttcacataaaccagtttaac |
36774224 |
T |
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| Q |
352 |
taataagtgctgtgaataagttgcatagaaatttcaaacctgataccttgtcttcgcgtgtgactagagttgggaagcaaagaggaagttgctaactacg |
451 |
Q |
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| T |
36774225 |
taataagtgccgtgaataagttgcatagaaatttcaaacctgataccttgtcgtcgcgtgtgactagagttgggaagcaaagaggaagttgctaactacg |
36774324 |
T |
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| Q |
452 |
gaaatttcaaagaactatggtggtcggttgaagtggaagcattttgttctatcacacttttgttcaccactaa---tttattaaactcaaaaacagtttt |
548 |
Q |
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| T |
36774325 |
gaaatttcaaagaactatggtggtcggttgaagtggaagcattttgttctatcacacttttgttcacccctaattttttattaaactcaaaaacagtttt |
36774424 |
T |
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| Q |
549 |
gtttaga |
555 |
Q |
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| T |
36774425 |
gtctaga |
36774431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 36773833 - 36774070
Alignment:
| Q |
17 |
aaactaagaacccctaaagaagcaaataaaatgccattaattttaaacgtgccccatacgacattaaacacagacaaacaatataaaagagaaagacata |
116 |
Q |
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| T |
36773833 |
aaactaagaacccctaaagaagcaaataaaatgccattgattttaaacgtgccccatacgacattaaacacagacaaacaatataaaagagaaagacata |
36773932 |
T |
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| Q |
117 |
acattgagataatcg--acccgaaaagccaaagaccaaataagtgcatgccttgtaggaagaacgagaagtaaaataaaacttttgtggtctgttataag |
214 |
Q |
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| T |
36773933 |
acattgagataatcggaacccgaaaagccaaagaccaaataagtgcatgccttgtaggaagaacgagaagtaaaataaaacttttgtggtctgttataag |
36774032 |
T |
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| Q |
215 |
catgaattagattcaataatgagagaaggcaagaaggg |
252 |
Q |
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| T |
36774033 |
catgaattagattcaataacgagagaaggcaagaaggg |
36774070 |
T |
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