View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_14 (Length: 515)

Name: NF16632_low_14
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_14
NF16632_low_14
[»] chr1 (2 HSPs)
chr1 (1-503)||(1875800-1876297)
chr1 (5-286)||(1808200-1808481)
[»] chr3 (2 HSPs)
chr3 (1-223)||(25797794-25798016)
chr3 (1-171)||(49993003-49993173)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 1875800 - 1876297
Alignment:
Q  1 tgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875800 tgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgtt 1875899  T
Q  101 ttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcattgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875900 ttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcattgg 1875999  T
Q  201 ttggatcaagtgcagcacttggannnnnnngtggaatgattgtgtatttgcttcttaagctaaggaattcgacaaaagataaaccataatataatatagt 300  Q
    | ||||||||||||||||| |||        |||||||||||||||||||||||||||||||||||||| |||||||||||||||     |||||||||     
T  1876000 tgggatcaagtgcagcactaggatttttggttggaatgattgtgtatttgcttcttaagctaaggaatttgacaaaagataaacc-----ataatatagg 1876094  T
Q  301 tccataaaatggatttggattatttgaagtaacaaatttcacgcggtcagaatattggtggtcattggattgagattgaattttgcagaaagcaagcaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  1876095 tccataaaatggatttggattatttgaagtaacaaatttcatgcgatcagaatattggtggtcattggattgagaccgaactttgcagaaagcaagcaaa 1876194  T
Q  401 tttcacacggtctaaaaatattgagcttgaaatcaaaattgtccagtcctaactgaattaccgacactctattgattgcatgaatgcatgggatttgtga 500  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  1876195 tttcacacggtctgaaaatattgagcttgaaatcaaaattgtccagtcctaactgaattaccgacactgtattgattgcatgaatgtgtgggatttgtga 1876294  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 1808200 - 1808481
Alignment:
Q  5 gcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgttttgc 104  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    || ||||||||||||||||||||||| || |    
T  1808200 gcacttcttggttttgcaaaattggtattgggattggttttaggaacttctttggcacacattttgcaacaatttccagttgggattttaggtgtgttac 1808299  T
Q  105 ttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcattggttgg 204  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1808300 ttttgtttgctggtattgaacttgctatgtgtgctagggatatgaatagtaaagaagattcttttgtggcacttatttgcactgctgtttcattggttgg 1808399  T
Q  205 atcaagtgcagcacttggannnnnnngtggaatgattgtgtatttgcttcttaagctaaggaattcgacaaaagataaacca 286  Q
    ||||||||| || ||||||        |||||||||||| ||| || | |||||||||||||||| ||  || |||||||||    
T  1808400 atcaagtgctgctcttggatttttggttggaatgattgtttatgtgttacttaagctaaggaattggagtaatgataaacca 1808481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25798016 - 25797794
Alignment:
Q  1 tgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgtt 100  Q
    |||||||||||||||||  | |||||||||||| |||||| |||| |||||||| |||||| ||||||||| |  |||||| || ||||| ||||| ||     
T  25798016 tgtggcacttcttggtgcaggaaaattggtattaggattgttgttgggaacttccttggcaaacattttaaagatgtttccggtcgggatcttaggagtg 25797917  T
Q  101 ttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcattgg 200  Q
    |||||||||||||||||  |||||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |||    
T  25797916 ttgcttttgtttgctggaattgaacttgctatgtgtgctagagacatgaatagcaaagaagatttctttgtggctcttatttccactgctgtttcaatgg 25797817  T
Q  201 ttggatcaagtgcagcacttgga 223  Q
    ||||||||| |||| || |||||    
T  25797816 ttggatcaaatgcatcatttgga 25797794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 49993173 - 49993003
Alignment:
Q  1 tgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgtt 100  Q
    ||||||| ||||||||| |||||||||||| ||||| || || || |||| ||| ||||| ||  |||| |  |||||||| || || |||||||| ||     
T  49993173 tgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttttcaaacagtttcctgtgggaattttaggggtg 49993074  T
Q  101 ttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgt 171  Q
    ||| | |||||||||||  ||||| | ||||||  |  |||||||||||||| |||||| ||||| |||||    
T  49993073 ttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgt 49993003  T

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