View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_15 (Length: 504)
Name: NF16632_low_15
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 44956638 - 44956152
Alignment:
| Q |
18 |
ctccaagactcgttgtttctgagcttcaaaagaacacactgaaattcctcaactttcataacttacaagtcccttgattcctcaattgcaacttctatat |
117 |
Q |
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| T |
44956638 |
ctccaagactcgttgtttatgagcttccaaagaacacactgaaattcctcaactttcataacttacaagtcccttgattcctcaattgcaacttctatat |
44956539 |
T |
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| Q |
118 |
atgtaaccaaattttcaagaaagagtgtgcattaccttgttcaccattttttgatcatacacatcttcacctggtttcccaccactgttattctattgaa |
217 |
Q |
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| T |
44956538 |
atgtaaccaaattttcaagaaagagtgtgcattaccttgttcaccattttttgatcatacacatcttcacctggtttcccaccactgttattctattgaa |
44956439 |
T |
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| Q |
218 |
atattcaaagatattctcatttagttccatttgcaaaagctcaaattgtcatcacattgtttgcaattgtaccttcttgaatcttgagttgtcatcacca |
317 |
Q |
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| T |
44956438 |
atattcaaagatattctcatttagttccatttgcaaaagctcaaattgtcatcacattgtttgcaattgtaccttcttgaatcttgagttgtcatcacca |
44956339 |
T |
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| Q |
318 |
acatgactttctctagaactttctaggcttctttgtatgtggttgcattctcaatatttttgaaattgatggaggaagtgtgaaacagttaggaaatgga |
417 |
Q |
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| T |
44956338 |
acatgactttctctagaactttctaggcttctttgtatgtggttgcattctcaatatttttgaaattgatggaggaagtgtgaaacagttaggaaatgga |
44956239 |
T |
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| Q |
418 |
atttaaaaaacgataaactgcactaacttctatcaatggatatgtcacttatttacacacttgtgcacttcatatggatttggtctt |
504 |
Q |
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| T |
44956238 |
atttaaaaaacgataaactgcactaacttctatcaatggatatctcacttatttacacacttgtgcacttcatatggatttggtctt |
44956152 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 4309819 - 4309770
Alignment:
| Q |
216 |
aaatattcaaagatattctcatttagttccatttgcaaaagctcaaattg |
265 |
Q |
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| T |
4309819 |
aaatattcaaaaatattttcatttggttccatttgcaaaagttcatattg |
4309770 |
T |
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