View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_low_16 (Length: 502)
Name: NF16632_low_16
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 117 - 484
Target Start/End: Original strand, 8463186 - 8463552
Alignment:
| Q |
117 |
ctacctataacatatcatatggtgataaataaaacataattataaagaaacagtctcaaagagcttatagtcgttaaattcaatattttatcatctcttt |
216 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8463186 |
ctacctataacatatcatatgttgttaaataaaacataattataaagaaacagtctcaaagagcttatagtcattaaattcaatattttatcatctcttt |
8463285 |
T |
|
| Q |
217 |
aattgaccaaaactatataaagctaaggagtgaagcaagcaaatgacaaatattacaattactacaagaaaatacgacatggttcgtttttcatcaatta |
316 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
8463286 |
aattgaccaaaa-tatataaagctaaggagtgaagcaagcaaatgacaaatattacaattactacaagaaaatacaatatggttcgtttttcatcaatta |
8463384 |
T |
|
| Q |
317 |
ccattatgtttcttttatttattgcatcctcatatgcagccaaaattgtaaatgtgcataccatttgcaagaaaactcaaaaccctagtttttgttcaac |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8463385 |
ccattatgtttcttttatttattgcatcctcatatgcagccaaaattgtaaatttgcataccatttgcaagaaaactcaaaaccctagtttttgttcaac |
8463484 |
T |
|
| Q |
417 |
ttttctcaaatcaagacctcgtagtgtacatggagaccttgttagccttgccaaatactccattgaag |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8463485 |
ttttctcaaatcaagacctcgtagtgtacatggagaccttgttagccttgctaaatactccattgaag |
8463552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 160 - 484
Target Start/End: Original strand, 8458531 - 8458855
Alignment:
| Q |
160 |
aaagaaacagtctcaaagagcttatagtcgttaaattcaatattttatcatctctttaattgaccaaaactatataaagctaaggagtgaagcaagcaaa |
259 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458531 |
aaagaaaaagtctcaaagtgcttatagtaattaaattcaatattttatcatctttttaattaaccaaaactatataaagctaaggagtgaagcaagcaaa |
8458630 |
T |
|
| Q |
260 |
tgacaaatattacaattactacaagaaaatacgacatggttcgtttttcatcaattaccattatgtttcttttatttattgcatcctcatatgcagccaa |
359 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8458631 |
tgaccaatattacaattactacaagaaaatacaacatggttcgtttttcatcaattaccattatgtttcttttatttattgcatcctcaaatgcagccaa |
8458730 |
T |
|
| Q |
360 |
aattgtaaatgtgcataccatttgcaagaaaactcaaaaccctagtttttgttcaacttttctcaaatcaagacctcgtagtgtacatggagaccttgtt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458731 |
aattgtaaatgtgcataccatttgcaagaaaactcaaaaccctagtttttgttcaacttttctcaaatcaagacctcgtagtgtacatggagaccttgtt |
8458830 |
T |
|
| Q |
460 |
agccttgccaaatactccattgaag |
484 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
8458831 |
agccttgcaaaatactccattgaag |
8458855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 160 - 465
Target Start/End: Original strand, 8449727 - 8450032
Alignment:
| Q |
160 |
aaagaaacagtctcaaagagcttatagtcgttaaattcaatattttatcatctctttaattgaccaaaactatataaagctaaggagtgaagcaagcaaa |
259 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449727 |
aaagaaaaagtctcaaagtgcttatagtaattaaattcaatattttatcatctttttaattaaccaaaactatataaagctaaggagtgaagcaagcaaa |
8449826 |
T |
|
| Q |
260 |
tgacaaatattacaattactacaagaaaatacgacatggttcgtttttcatcaattaccattatgtttcttttatttattgcatcctcatatgcagccaa |
359 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8449827 |
tgaccaatattacaattactacaagaaaatacaacatggttcgtttttcatcaattaccattatgtttcttttatttattgcatcctcaaatgcagccaa |
8449926 |
T |
|
| Q |
360 |
aattgtaaatgtgcataccatttgcaagaaaactcaaaaccctagtttttgttcaacttttctcaaatcaagacctcgtagtgtacatggagaccttgtt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449927 |
aattgtaaatgtgcataccatttgcaagaaaactcaaaaccctagtttttgttcaacttttctcaaatcaagacctcgtagtgtacatggagaccttgtt |
8450026 |
T |
|
| Q |
460 |
agcctt |
465 |
Q |
| |
|
|||||| |
|
|
| T |
8450027 |
agcctt |
8450032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 285 - 483
Target Start/End: Original strand, 8638087 - 8638285
Alignment:
| Q |
285 |
aaaatacgacatggttcgtttttcatcaattaccattatgtttcttttatttattgcatcctcatatgcagccaaaattgtaaatgtgcataccatttgc |
384 |
Q |
| |
|
||||||| ||||| ||| |||| |||| ||||| ||| |||||||||||| | || ||| ||||||||| |||||||||| ||||| | | ||||||| |
|
|
| T |
8638087 |
aaaatacaacatgattcattttccatccattacaattgtgtttcttttatgtgttacattctcatatgccaccaaaattgtggatgtggaaatcatttgc |
8638186 |
T |
|
| Q |
385 |
aagaaaactcaaaaccctagtttttgttcaacttttctcaaatcaagacctcgtagtgtacatggagaccttgttagccttgccaaatactccattgaa |
483 |
Q |
| |
|
|| || || || ||||| ||||||||||||||||||||||||||||||| | || || |||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
8638187 |
aaagaagctgaagacccttcattttgttcaacttttctcaaatcaagacctcctggtataagtggagatcttgttagccttgacaaatattccattgaa |
8638285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 406 - 483
Target Start/End: Complemental strand, 8634075 - 8633998
Alignment:
| Q |
406 |
ttttgttcaacttttctcaaatcaagacctcgtagtgtacatggagaccttgttagccttgccaaatactccattgaa |
483 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||||| |||||| || |||||||||| |||||||||||||||| |
|
|
| T |
8634075 |
ttttgttcaacttttctcaaatcaaggcctcatggtgtaagtggagatctcgttagccttgacaaatactccattgaa |
8633998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 483
Target Start/End: Original strand, 8477195 - 8477273
Alignment:
| Q |
405 |
tttttgttcaacttttctcaaatcaagacctcgtagtgtacatggagaccttgttagccttgccaaatactccattgaa |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| | ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
8477195 |
tttttgttcaacttttctcaaatcaagacctgctggtgtaggtcgagacctcgttagccttgcacaatactccattgaa |
8477273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 8637979 - 8638061
Alignment:
| Q |
194 |
attcaatattttatcatctctttaattgaccaaaactatataaagctaaggagtgaagcaagcaaatgacaaatattacaatt |
276 |
Q |
| |
|
|||||||||||||||| | || |||||| | |||||||||||||||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
8637979 |
attcaatattttatcaagttttcaattgatgagaactatataaagctaatgagtgaagcaagcaaatggcaaatattaaaatt |
8638061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 8634270 - 8634221
Alignment:
| Q |
227 |
aactatataaagctaaggagtgaagcaagcaaatgacaaatattacaatt |
276 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
8634270 |
aactctataaagctaaagagtgaagcaagcaaatggcaaatattacaatt |
8634221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 1146496 - 1146544
Alignment:
| Q |
50 |
gtagtggccggaatttgaataccgaacgttacatattttatgcattgtc |
98 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
1146496 |
gtagtggccgagatttgaacaccgaaccttatatattttatgcattgtc |
1146544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 16475645 - 16475693
Alignment:
| Q |
50 |
gtagtggccggaatttgaataccgaacgttacatattttatgcattgtcc |
99 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
16475645 |
gtagtggctggaatttgaaccccgaac-ttacatattttatgcattgtcc |
16475693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 17917141 - 17917177
Alignment:
| Q |
63 |
tttgaataccgaacgttacatattttatgcattgtcc |
99 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
17917141 |
tttgaatcccgaaccttacatattttatgcattgtcc |
17917177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University