View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_19 (Length: 491)
Name: NF16632_low_19
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 43037980 - 43037528
Alignment:
| Q |
18 |
aaagctctatgcatattccaataacttcttgaagaattaaggaaataatatcacttttatatatgtatgtatatatgtctttgctaaattcaagtgctgt |
117 |
Q |
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| T |
43037980 |
aaagctctatgcatattccaataacttcttgaagaattaaggaaataatatcacttttatatatgtatgtatatatgtctttgctaaattcaagtgctgt |
43037881 |
T |
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| Q |
118 |
atatagtagctcagtcagagttttgtgcatattagtatcttgaaatggactggacttccttgtttcattacaattaataatccctgcgtgtattgaannn |
217 |
Q |
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| T |
43037880 |
atacagtagctcagtcagacttttgtgcatattagtatcttgaaatggactggacttccttgtttccttacaattaataatccctgcgtgtattgaattt |
43037781 |
T |
|
| Q |
218 |
nnnnnnnnnnnnnnnnnactgcagaagaaatggttttgctgttgcacaaacgtccattctgagtcatgactcatgagagtgctttgagctagggggaaaa |
317 |
Q |
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| T |
43037780 |
ttatttttattttttttactgctgaagaaatggttttgctgttgcacaaacgtccattctgagtcatgactcatgagagtgctttgagctagggggaaaa |
43037681 |
T |
|
| Q |
318 |
taacaattaggaaaatagatattacgttatatttatgatttatggtgaacaatcactgggannnnnnngacctaatacttgttgtattgaaacttaactt |
417 |
Q |
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| T |
43037680 |
taacaattaggaaaatagatattacgttatatttatgatttatggtgaacaatcactgggatttttttgacctaatacttgttgtattgaaacttaactt |
43037581 |
T |
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| Q |
418 |
cacatgataatttttcgattcttatcgactcatatttctctattgtttaaggg |
470 |
Q |
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| T |
43037580 |
cacatgataatttttcgattcttatcgactcatatttctctattgtttaaggg |
43037528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 241 - 470
Target Start/End: Original strand, 739102 - 739331
Alignment:
| Q |
241 |
gaagaaatggttttgctgttgcacaaacgtccattctgagtcatgactcatgagagtgctttgagctagggggaaaataacaattaggaaaatagatatt |
340 |
Q |
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| T |
739102 |
gaagaaatggttttgctgttgcacaaacgtccattctgagtcatgactcatgagagtgctttgagctagggggaaaataacaattaggaaaatagatatt |
739201 |
T |
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| Q |
341 |
acgttatatttatgatttatggtgaacaatcactgggannnnnnngacctaatacttgttgtattgaaacttaacttcacatgataatttttcgattctt |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
739202 |
acgttatatttatgatttatggtgaacaatcactgggatttttttgacctaatacttgttgtattgaaacttaacttcacatgataatttttcgattctt |
739301 |
T |
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| Q |
441 |
atcgactcatatttctctattgtttaaggg |
470 |
Q |
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| T |
739302 |
atcgactcatatttctctattgtttaaggg |
739331 |
T |
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