View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_21 (Length: 454)
Name: NF16632_low_21
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 454
Target Start/End: Original strand, 39936136 - 39936575
Alignment:
| Q |
15 |
aaaatatcagtggatcatctacaaagagatctcgtgctgctgaggtccataatctctcagagcgggttggtagttttgacgcacatttctttgagtttac |
114 |
Q |
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| T |
39936136 |
aaaatatcagtggatcatctacaaagagatctcgtgctgctgaggtccataatctctcagagcgggttggtagttttgacacacatttgtttgagtttac |
39936235 |
T |
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| Q |
115 |
atattttattctgctttcctcataacattaaagttttcacattgcatttctatgcagaggcgccgtgatcggattaatgaaaagatgaaagctctgcaag |
214 |
Q |
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| T |
39936236 |
atattttattctgctttcctcataacattaaagttttcacattgcatttctatgcagaggcgccgtgatcggattaatgaaaagatgaaagctctgcaag |
39936335 |
T |
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| Q |
215 |
aacttatacctcgatctaataaggtaaactgacgtttagatttcccagtgttttatttcttgataatgtaaggggcagggttttagatttaatttacttc |
314 |
Q |
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| T |
39936336 |
aacttatacctcgatctaataaggtaaacttacgtttagatttcccagtgttttatttcttgataatgtaaggggcagggttttagatttaatttacttc |
39936435 |
T |
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| Q |
315 |
cttatttttgtttctaatctttctcctacttttaattcatagtctgacaaagcatctatgctggatgaagcaattgattacttgaagtcgctacagttac |
414 |
Q |
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| T |
39936436 |
cttttttttgtttctaatctttctcctactcttaattcatagtctgacaaagcatctatgctggatgaagcaattgattacttgaagtcgctgcagttac |
39936535 |
T |
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| Q |
415 |
aagtgcaggtagattcttcttttttgggtgaacacattct |
454 |
Q |
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| T |
39936536 |
aagtgcaggtagattcttcttttttgggtgaacacattct |
39936575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 29731614 - 29731543
Alignment:
| Q |
353 |
atagtctgacaaagcatctatgctggatgaagcaattgattacttgaagtcgctacagttacaagtgcaggt |
424 |
Q |
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| T |
29731614 |
atagtctgacaaagcttcaatgttggatgaagcaatcgaatacttgaagtcattgcagttacaagtgcaggt |
29731543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 29731749 - 29731712
Alignment:
| Q |
187 |
attaatgaaaagatgaaagctctgcaagaacttatacc |
224 |
Q |
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| T |
29731749 |
attaacgaaaagatgaaagctttgcaagaacttatacc |
29731712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 29731889 - 29731844
Alignment:
| Q |
36 |
caaagagatctcgtgctgctgaggtccataatctctcagagcgggt |
81 |
Q |
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| T |
29731889 |
caaagagatcccgtgctgcagaggttcataatctctcagagagggt |
29731844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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