View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_24 (Length: 439)
Name: NF16632_low_24
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 8285752 - 8285338
Alignment:
| Q |
18 |
aggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaaccttgaatgcggcgtccttagtaatcaacgtacattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
8285752 |
aggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccctgcatcaaccttgaatgcggcgtccttagtaatcaccatacattt |
8285653 |
T |
|
| Q |
118 |
ttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaattcatctctcatatgcaacttggaaacacaaacttcaactaaatgaagtcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8285652 |
ttccgcttcatcttccacaccaaatcctgacaaacacacaaataacaattcatctctcatatgcaacttggaaacacaaacttcaactaaatgaaatcat |
8285553 |
T |
|
| Q |
218 |
gcacattgcacacgtctaagggatataattaaacgaaatcatacccggtgctttaaattttgggtgcatatatatgtgcaagtttttaagggagcattat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8285552 |
gcacattgcacacgtctaagggatataattaaacgaaatcatacccggtgctttaaattttgggtgcatatatatgtgcaagtttttaagggagcaatat |
8285453 |
T |
|
| Q |
318 |
atgtaaaaattgatatatttttgttgttttaactgtctgattctcagaaagaggcttggtaatttcgagtttggcttaatcaaaaggcaagtctaataga |
417 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8285452 |
atgtaaaaattgatatatttttgttgtttaaactgtctgattctcagaaagcggcttggtaatttcgagtttggcttaatcaaaaggcaagtctaataga |
8285353 |
T |
|
| Q |
418 |
aaagatattccaact |
432 |
Q |
| |
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||| || |||||||| |
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| T |
8285352 |
aaaaatgttccaact |
8285338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 34697492 - 34697227
Alignment:
| Q |
18 |
aggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaaccttgaatgcggcgtccttagtaatcaacgtacattt |
117 |
Q |
| |
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||||||||| |||||||||| ||| |||||| || ||||||||||||||||||||||| ||| | |||||| |||| ||||||||| | ||||||| |
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| T |
34697492 |
aggagtcaagcagaactgctccatcgccaaagaatttacgaacgttaaagggccccacattaacttcgaatgcaccgtcgatagtaatcaccctacattt |
34697393 |
T |
|
| Q |
118 |
ttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaattcatctctcatatgcaacttggaaacacaaacttcaactaaatgaagtcat |
217 |
Q |
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| | | ||| ||| ||| ||| ||||| ||||||||| ||||||||| || |||||||||||| | || ||||||| ||||| |||||||| ||| |
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| T |
34697392 |
tgcagtaacattgtcctcactaaaacctgagaaacacacatacaacaatttatgagtcatatgcaactcgaaagcacaaacatcaaccaaatgaagccat |
34697293 |
T |
|
| Q |
218 |
gcacattgcacacgtctaagggatataattaaacgaaatcatacccggtgctttaaattttgggtg |
283 |
Q |
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| |||||||||||||| | | ||||| || ||| || ||||||| |||||||||||| |||||| |
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| T |
34697292 |
gaacattgcacacgtccatgagatattatagaacataaccataccccgtgctttaaattctgggtg |
34697227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 34687581 - 34687526
Alignment:
| Q |
17 |
aaggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccc |
72 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
34687581 |
aaggagtcaaacagaactgctctattaccaaaggattcacgaacgttaaagggccc |
34687526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 24969058 - 24968890
Alignment:
| Q |
15 |
caaaggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaaccttgaatgcggcgtccttagtaatcaacgtaca |
114 |
Q |
| |
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||||||||||||| ||||||||| ||| ||||| || ||||||||||||||| ||| ||| ||||| |||| |||| | ||||||| || | || | |
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| T |
24969058 |
caaaggagtcaaatagaactgcttcatcaccaaacaattcacgaacgttaaaggaccctgcatgaacctcgaatacggcaccattagtaaccaccctata |
24968959 |
T |
|
| Q |
115 |
tttttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaattcatctctcatatgcaact |
185 |
Q |
| |
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|||| || |||||||| |||||| ||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
24968958 |
ttttgtcgtaccatcttccttaccaaaacctgacaaacacaca--caacaattcatctgtaatatgcaact |
24968890 |
T |
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