View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_25 (Length: 436)
Name: NF16632_low_25
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 6 - 415
Target Start/End: Complemental strand, 20631786 - 20631377
Alignment:
| Q |
6 |
actgaaatgaagatgatgagatgatacttgtttatgacttcatgtcgaatggaagtctttatgaccatcttcattcgaagcaaaaagatcaacaccagcc |
105 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20631786 |
actgcaatgaagatgatgagatgatacttgtttatgacttcatgtcgaatggaagtctttatgaccatcttcattcgaagcaaaaagatcaacaccagcc |
20631687 |
T |
|
| Q |
106 |
tcatttgtcatggattcaaagacttgaaatttgcatcggagttgcaagaggtttgcattacttacacaccggcacaaagcatagaatcattcaccgcgat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20631686 |
tcatttgtcatggattcaaagacttgaaatttgcatcggagttgcaagaggtttgcattacttacacaccggcacaaagcatagaatcattcaccgcgat |
20631587 |
T |
|
| Q |
206 |
atcaagacaacaaacatactcttagaccataattggattgctaaaatttcagatttcggtttatcaaaggaaagttacacttccttaggcacaactgtcg |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20631586 |
atcaagacaacaaacatactcttagaccataattggattgctaaaatttcagatttcggtttatcaaaggaaagttacacttccttaggcacaactgtcg |
20631487 |
T |
|
| Q |
306 |
tcaaaggtagcaccggttaccttgatccggaatactatcaacgacgcgtgttgactgagaaatctgatttattcacacttggtgtggttttgttggaagt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
20631486 |
tcaaaggtagcaccggttaccttgatccggaatactatcaacgatgcatgttgactgagaaatctgatttatactcacttggtgtggttttgttggaagt |
20631387 |
T |
|
| Q |
406 |
gctaagtgca |
415 |
Q |
| |
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|||||||||| |
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| T |
20631386 |
gctaagtgca |
20631377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 6 - 415
Target Start/End: Complemental strand, 20647885 - 20647476
Alignment:
| Q |
6 |
actgaaatgaagatgatgagatgatacttgtttatgacttcatgtcgaatggaagtctttatgaccatcttcattcgaagcaaaaagatcaacaccagcc |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20647885 |
actgcaatgaagatgatgagatgatacttgtttatgacttcatgtcgaatggaagtctttatgaccatcttcattcgaagcaaaaagatcaacagcagcc |
20647786 |
T |
|
| Q |
106 |
tcatttgtcatggattcaaagacttgaaatttgcatcggagttgcaagaggtttgcattacttacacaccggcacaaagcatagaatcattcaccgcgat |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
20647785 |
tcatttgtcatggattcaaagacttgaaatttgcatcggagttgcaagaggtttgcattacttacacaccggcacaaagcatacaatcattcaccgcgat |
20647686 |
T |
|
| Q |
206 |
atcaagacaacaaacatactcttagaccataattggattgctaaaatttcagatttcggtttatcaaaggaaagttacacttccttaggcacaactgtcg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20647685 |
atcaagacaacaaacatactcttagaccataattggattgctaaaatttcagatttcggtttatcaaaggaaagttacacttccttaggcacaactgtcg |
20647586 |
T |
|
| Q |
306 |
tcaaaggtagcaccggttaccttgatccggaatactatcaacgacgcgtgttgactgagaaatctgatttattcacacttggtgtggttttgttggaagt |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
20647585 |
tcaaaggtagcaccggttaccttgatccggaatactatcaacgatgcatgttgactgagaaatctgatttatactcacttggtgtggttttgttggaagt |
20647486 |
T |
|
| Q |
406 |
gctaagtgca |
415 |
Q |
| |
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|||||||||| |
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|
| T |
20647485 |
gctaagtgca |
20647476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 6061382 - 6061316
Alignment:
| Q |
18 |
atgatgagatgatacttgtttatgacttcatgtcgaatggaagtctttatgaccatcttcattcgaa |
84 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| |
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| T |
6061382 |
atgatgagatgatacttgtttatgacttcatgtccaatggaactcttcatgaccatcttcaatcgaa |
6061316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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