View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_28 (Length: 431)
Name: NF16632_low_28
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 30403351 - 30402950
Alignment:
| Q |
20 |
tgacagtcaacaatgtcacgtctaataatatcaggattctccacctcaaaaagacgcttacgtgttgaaatagtttcgtt--ataaatggagactgtatt |
117 |
Q |
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| T |
30403351 |
tgacggtcaacaatgtcacgtctaataatattaggattctccacctcaaaaagacgcttacgtgttgaaatagtttggttgtataaatggagactgtatt |
30403252 |
T |
|
| Q |
118 |
cataattgtcttgaatttaattgtgaaagagggtctaacgtaggtcaaacttttagattgcatgtattgagcaacgaaatattgaattcaagggttttgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |
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| T |
30403251 |
cataattgtcttgaatttaattgtgaaagagggtctaacgt----caaacttttagattgcatgcgttgagcaacgaaacattgaatttgagggttttgt |
30403156 |
T |
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| Q |
218 |
ctgccagatattcaaacgagatgaaactcaacatgcttaatcttaaagcatgtgctactaaatgagaaaacatttgaagagtttgagatacaagacaaat |
317 |
Q |
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||||||||||| |||| ||||||||||||||||| |||||||||||| | ||||||| ||||| ||||||||||||||||| | ||||||||||| |||| |
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| T |
30403155 |
ctgccagatatacaaatgagatgaaactcaacatacttaatcttaaaccctgtgctaataaataagaaaacatttgaagagctagagatacaagataaat |
30403056 |
T |
|
| Q |
318 |
attttgccgagttgcaaaggggggtaggtgtcccatgattgaaaatatgtatgctataaattttttgctttcgaagttattttatgcagatgtgcatgcg |
417 |
Q |
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|| ||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||| |
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| T |
30403055 |
atgttgccaagttagaaaagggggtaggtgtcccatgattgaaaatatgtacgctataaattttttgcttttgaagttattttatgcagatgcgcgtgca |
30402956 |
T |
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| Q |
418 |
tctctg |
423 |
Q |
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|||||| |
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| T |
30402955 |
tctctg |
30402950 |
T |
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