View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_33 (Length: 392)
Name: NF16632_low_33
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 41866166 - 41866319
Alignment:
| Q |
18 |
agagagataaaaagatacacaaattgatttcacattggatagaatggaaaagagtaaaattcaaacgtacaaggatggtattgcaagcagttatggtatt |
117 |
Q |
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| T |
41866166 |
agagagataaaaagatacacaaactgttttcacattggatagaatggaaaagagtaaaattcaaacgtacagggatggtattgcaagcagttatggtatt |
41866265 |
T |
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| Q |
118 |
ttgttctgcatcaacaaagaggcttcaataaagaatagagataaatcaacaatc |
171 |
Q |
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| T |
41866266 |
ttgttctgcatcaacaaagaggcttcaataaagaatagagataaatcaacaatc |
41866319 |
T |
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