View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_37 (Length: 383)

Name: NF16632_low_37
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_37
NF16632_low_37
[»] chr1 (7 HSPs)
chr1 (23-367)||(29827416-29827760)
chr1 (284-359)||(37493192-37493267)
chr1 (274-347)||(25175316-25175389)
chr1 (39-103)||(1241688-1241751)
chr1 (285-365)||(31017167-31017246)
chr1 (50-103)||(12404156-12404208)
chr1 (39-103)||(46750780-46750843)
[»] chr8 (3 HSPs)
chr8 (259-356)||(16611122-16611219)
chr8 (267-365)||(8164503-8164601)
chr8 (23-74)||(28140470-28140521)
[»] chr7 (3 HSPs)
chr7 (267-356)||(28574523-28574612)
chr7 (262-365)||(45669877-45669980)
chr7 (269-365)||(39023468-39023562)
[»] chr5 (4 HSPs)
chr5 (262-364)||(35106568-35106669)
chr5 (262-364)||(4261300-4261402)
chr5 (261-365)||(7155190-7155294)
chr5 (25-104)||(37708785-37708863)
[»] chr6 (1 HSPs)
chr6 (306-356)||(12748401-12748451)
[»] chr2 (1 HSPs)
chr2 (271-364)||(3272460-3272553)
[»] chr3 (1 HSPs)
chr3 (41-104)||(43417259-43417322)
[»] chr4 (3 HSPs)
chr4 (262-365)||(43793155-43793258)
chr4 (42-102)||(30474147-30474208)
chr4 (314-365)||(42507266-42507318)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 23 - 367
Target Start/End: Original strand, 29827416 - 29827760
Alignment:
Q  23 ggcacatggccccgtatcacatttgtatgtgatggtagaagaggtgtgtgtcaccatatggtggtcaacgtatcaccactcatgttttatgtagattgcc 122  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29827416 ggcacagggccccgcatcacatttgtatgtgatggtagaagaggtgtgtgccaccatatggtggtcaacgtatcaccactcgtgttttatgtagattgcc 29827515  T
Q  123 acgagcccaccaccaacccatgattttccttttgacgtcgtaatgacaagctgacaactcacaatatgaacaacactataaaatatgacatttgatgata 222  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827516 acgagcccaccaccaacccatgatttaccttttgacgtcataatgacaagctgacaactcacaatatgaacaacactataaaatatgacatttgatgata 29827615  T
Q  223 aagtgatagggcaatctataatctatattagtaactttggagatatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827616 aagtgatagggcaatctataatctatattagtaactttggagaaatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaa 29827715  T
Q  323 tatctataatttaattatttcaaaaggatatattattcaattcat 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29827716 tatctataatttaattatttcaaaaggatatattattcaattcat 29827760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 359
Target Start/End: Original strand, 37493192 - 37493267
Alignment:
Q  284 acaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattatt 359  Q
    ||||||||| || || |||| |||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||    
T  37493192 acaccaaatcaatatcatttaggcacacattcattaaaacatctatcatttaataatttcaaaaagatatattatt 37493267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 25175316 - 25175389
Alignment:
Q  274 tatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaa 347  Q
    ||||||||| ||||||||| ||||| |||| ||||||   |||||||||||||||| |||||||||||||||||    
T  25175316 tatggacacaacaccaaatcaaaatcatttaggcacatcctcattaaaatatctatcatttaattatttcaaaa 25175389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 1241688 - 1241751
Alignment:
Q  39 tcacatttgtatgtgatggtagaagaggtgtgtgtcaccatatggtggtcaacgtatcaccactc 103  Q
    |||||||||| |||| |||||||||||||||||| || || ||||| ||||||||||||||||||    
T  1241688 tcacatttgtgtgtggtggtagaagaggtgtgtgccatca-atggtcgtcaacgtatcaccactc 1241751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 31017246 - 31017167
Alignment:
Q  285 caccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattcaattc 365  Q
    |||||||| |||||||||| || ||||| |||||||||||||||| ||||||||| || ||||  |||||||||| |||||    
T  31017246 caccaaatcaaaattatttaggtacacactcattaaaatatctatcatttaattaatt-aaaaatatatattatttaattc 31017167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 12404208 - 12404156
Alignment:
Q  50 tgtgatggtagaagaggtgtgtgtcaccatatggtggtcaacgtatcaccactc 103  Q
    |||| |||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  12404208 tgtggtggtagaagatgtgtgtgccacc-tatggtggtcaacgtatcaccactc 12404156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 46750780 - 46750843
Alignment:
Q  39 tcacatttgtatgtgatggtagaagaggtgtgtgtcaccatatggtggtcaacgtatcaccactc 103  Q
    |||||||||| |||  | |||||||| |||||||||||| ||| |||||||| ||||||||||||    
T  46750780 tcacatttgtgtgttgtagtagaagatgtgtgtgtcacc-tatcgtggtcaaggtatcaccactc 46750843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 16611219 - 16611122
Alignment:
Q  259 ttggagatatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatatt 356  Q
    ||||||| |||||| |||| |||| | ||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||    
T  16611219 ttggagaaatacttgtatgaacacaaaaccaaattaaaatcatttaggcacatattcattaaaatatctatcatttaattatttcaaaaagatatatt 16611122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 365
Target Start/End: Complemental strand, 8164601 - 8164503
Alignment:
Q  267 atacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattcaattc 365  Q
    |||||||||||||||| ||||||||| |||||| ||| |||||||||| ||||||||||||||  |||||||||||||||| | |||||| || |||||    
T  8164601 atacttatatggacacaacaccaaatcaaaattttttaggcacacatttattaaaatatctatcctttaattatttcaaaaaggtatatttttgaattc 8164503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 28140470 - 28140521
Alignment:
Q  23 ggcacatggccccgtatcacatttgtatgtgatggtagaagaggtgtgtgtc 74  Q
    ||||||||||| |||||||||||||| || |||||||||||| |||| ||||    
T  28140470 ggcacatggccacgtatcacatttgtgtgggatggtagaagatgtgtatgtc 28140521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 28574612 - 28574523
Alignment:
Q  267 atacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatatt 356  Q
    |||||||||||||||| ||||||||| |||||  ||| |||||||| |||||||||||||||| ||||| ||||||||||| ||||||||    
T  28574612 atacttatatggacacaacaccaaatcaaaatcttttaggcacacactcattaaaatatctatcatttagttatttcaaaaagatatatt 28574523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 365
Target Start/End: Original strand, 45669877 - 45669980
Alignment:
Q  262 gagatatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattca 361  Q
    |||| |||||||||| || || ||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||| ||||  | |||||||| |    
T  45669877 gagaaatacttatatagagacaacaccaaatcaaaattatttaggcacacactcattaaaatatctatcatttaattatttaaaaaaaaaatattattta 45669976  T
Q  362 attc 365  Q
    ||||    
T  45669977 attc 45669980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 39023468 - 39023562
Alignment:
Q  269 acttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattcaattc 365  Q
    ||||||||||| || ||||||||| ||||| | || || ||||  |||||||||||| ||| ||||||||||||||||| |||||||| || |||||    
T  39023468 acttatatggatacaacaccaaatcaaaatcacttaggtacac--tcattaaaatatttatcatttaattatttcaaaaagatatattttttaattc 39023562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 364
Target Start/End: Original strand, 35106568 - 35106669
Alignment:
Q  262 gagatatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattca 361  Q
    |||| |||||| ||||||||| ||||||||| ||| |||||| || ||||| ||||| |||||||||| ||||||||||||||||| ||||||||||| |    
T  35106568 gagaaatacttgtatggacacaacaccaaatcaaa-ttatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattattta 35106666  T
Q  362 att 364  Q
    |||    
T  35106667 att 35106669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 364
Target Start/End: Original strand, 4261300 - 4261402
Alignment:
Q  262 gagatatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattca 361  Q
    |||| |||||||||| | ||| ||||||||| ||||| |||| | |||||| | |||||||||||||| |||||||||||||||||  |||||||||| |    
T  4261300 gagaaatacttatatagccacaacaccaaatcaaaatcatttagacacacactaattaaaatatctattatttaattatttcaaaaatatatattattta 4261399  T
Q  362 att 364  Q
    |||    
T  4261400 att 4261402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 7155294 - 7155190
Alignment:
Q  261 ggagatatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattc 360  Q
    ||||| |||||||||| ||||| | || |||| ||||| |||| |  | ||| |||||||||||||||| |||||||||||||||||  ||||||||||     
T  7155294 ggagaaatacttatatagacacaatactaaatcaaaatcatttagatatacactcattaaaatatctatcatttaattatttcaaaaatatatattattt 7155195  T
Q  361 aattc 365  Q
    |||||    
T  7155194 aattc 7155190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 37708785 - 37708863
Alignment:
Q  25 cacatggccccgtatcacatttgtatgtgatggtagaagaggtgtgtgtcaccatatggtggtcaacgtatcaccactca 104  Q
    ||||||||| ||| |||||||| | ||||||||||||| ||||||| | || | | ||||||||||| ||||||||||||    
T  37708785 cacatggccacgtgtcacatttatgtgtgatggtagaaaaggtgtgcggca-cttgtggtggtcaacttatcaccactca 37708863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 12748451 - 12748401
Alignment:
Q  306 gcacacattcattaaaatatctataatttaattatttcaaaaggatatatt 356  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  12748451 gcacacattcattaaaatatctatcatttaattatttcaaaaagatatatt 12748401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 3272460 - 3272553
Alignment:
Q  271 ttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattcaatt 364  Q
    |||||| ||||| ||||||||| ||||| |||| | || | | |||||||||||||||| |||||||||||||||||  |||||||||| ||||    
T  3272460 ttatatagacacaacaccaaatcaaaatcatttagacatatactcattaaaatatctattatttaattatttcaaaaatatatattatttaatt 3272553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 43417259 - 43417322
Alignment:
Q  41 acatttgtatgtgatggtagaagaggtgtgtgtcaccatatggtggtcaacgtatcaccactca 104  Q
    ||||||||||||  |||||||||||||||||| | || |||||||||||| |||||||||||||    
T  43417259 acatttgtatgtagtggtagaagaggtgtgtgccgccgtatggtggtcaatgtatcaccactca 43417322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 365
Target Start/End: Original strand, 43793155 - 43793258
Alignment:
Q  262 gagatatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattca 361  Q
    |||| |||||| |||||| ||  ||| |||| ||||| |||| ||||| || ||||||| | |||||| ||||||||||||||||| |||||| |||| |    
T  43793155 gagaaatacttgtatggatacatcactaaatcaaaatcatttaggcacgcactcattaatacatctatcatttaattatttcaaaaagatataatattta 43793254  T
Q  362 attc 365  Q
    ||||    
T  43793255 attc 43793258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 30474147 - 30474208
Alignment:
Q  42 catttgtatgtgatggtagaagaggtgtgtgt--caccatatggtggtcaacgtatcaccact 102  Q
    ||||||| |||| | |||||||||||||||||  |||| ||||||||||||||||||||||||    
T  30474147 catttgtgtgtggtagtagaagaggtgtgtgtgtcacc-tatggtggtcaacgtatcaccact 30474208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 42507318 - 42507266
Alignment:
Q  314 tcattaaaatatctataatttaattatttcaaaaggata-tattattcaattc 365  Q
    |||||| ||||||||| ||||||||||||||||| |||| ||||||| |||||    
T  42507318 tcattataatatctattatttaattatttcaaaaagatattattatttaattc 42507266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University