View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_low_38 (Length: 378)
Name: NF16632_low_38
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_38 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 8463563 - 8463898
Alignment:
| Q |
1 |
caaaataaccaacacaatcaatctaatcaataaactaatcgtacgaagtcgttataatgccgaaaaatcccattacctgtcgtgttcactagattttact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8463563 |
caaaataaccaacacaatcaatctaatcaataaactaatcgtacgaagtcgtaataacgccgaaaaatcccattacctgtcgtgttcactagattttact |
8463662 |
T |
|
| Q |
101 |
gaagctcttgatgacattgaggaagctcaaggtttcattgagagtggagagtatcagggtttgtatgaggatgcagaatctattagagaagttattccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8463663 |
gaagctcttgatgacattgaggaagctcaaggtttcattgagagtggagagtatcagggtttgtatgaggatgcagaatctattagagaagttattccag |
8463762 |
T |
|
| Q |
201 |
attgtcttaatggagcttatggaaacccttcttttgatgataatagtttgcttccaaaatatgctaatgatgttgagaaagttgctgagattattttagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8463763 |
attgtcttaatggagcttatggaaacccttcttttgatgataatagtttgcttccaaaatatgctcatgatgttgagaaagttgctgagattattttagc |
8463862 |
T |
|
| Q |
301 |
tatctcaaatattttgagacattagaatacttgtag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8463863 |
tatctcaaatattttgagacattagaatacttgtag |
8463898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 8458866 - 8459201
Alignment:
| Q |
1 |
caaaataaccaacacaatcaatctaatcaataaactaatcgtacgaagtcgttataatgccgaaaaatcccattacctgtcgtgttcactagattttact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
8458866 |
caaaataaccaacacaatcaatctaatcacaaaactaatcgcacgaagtcgttttaacgccgaaaaatcccattaccgaaggtgttcaatagtttttact |
8458965 |
T |
|
| Q |
101 |
gaagctcttgatgacattgaggaagctcaaggtttcattgagagtggagagtatcagggtttgtatgaggatgcagaatctattagagaagttattccag |
200 |
Q |
| |
|
| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |
|
|
| T |
8458966 |
ggtattcttgatgaaattaaggaagctcaaggtttcattgagagtggagagtatcagggtttgtatgaggatgcagaatctataagagaagctgctccag |
8459065 |
T |
|
| Q |
201 |
attgtcttaatggagcttatggaaacccttcttttgatgataatagtttgcttccaaaatatgctaatgatgttgagaaagttgctgagattattttagt |
300 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
8459066 |
attgtcttaataaagcttatgaaaccccttcttttgatgaaaatactttgcttccaaaatatgctcatgatgttgagaaagttgctgatattattttagt |
8459165 |
T |
|
| Q |
301 |
tatctcaaatattttgagacattagaatacttgtag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8459166 |
tatctcaaatattttgagacattagaatacttgtag |
8459201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University