View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_4 (Length: 735)

Name: NF16632_low_4
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_4
NF16632_low_4
[»] chr2 (1 HSPs)
chr2 (170-721)||(17831224-17831775)
[»] chr4 (4 HSPs)
chr4 (173-717)||(7135282-7135805)
chr4 (463-590)||(52525386-52525515)
chr4 (361-521)||(22292156-22292316)
chr4 (638-713)||(52525311-52525386)
[»] chr1 (1 HSPs)
chr1 (19-145)||(26493150-26493285)
[»] chr7 (3 HSPs)
chr7 (178-233)||(33865884-33865939)
chr7 (19-145)||(19079622-19079759)
chr7 (436-495)||(37362214-37362273)
[»] chr6 (3 HSPs)
chr6 (178-233)||(11075171-11075226)
chr6 (447-521)||(10093043-10093117)
chr6 (440-521)||(33044908-33044989)
[»] chr3 (3 HSPs)
chr3 (178-233)||(23216755-23216810)
chr3 (178-233)||(30765777-30765831)
chr3 (476-521)||(17682380-17682425)
[»] chr8 (3 HSPs)
chr8 (440-521)||(5658334-5658415)
chr8 (447-520)||(14677485-14677558)
chr8 (440-521)||(31100334-31100415)
[»] scaffold0045 (1 HSPs)
scaffold0045 (441-521)||(11096-11176)
[»] scaffold0035 (1 HSPs)
scaffold0035 (440-520)||(35639-35719)


Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 170 - 721
Target Start/End: Original strand, 17831224 - 17831775
Alignment:
Q  170 ctatcacgccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctcccgcgacggcgccaaatttggccatttcatctccgc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  17831224 ctatcacgccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctcccgtggcggcgccaaatctggccatttcatctccgc 17831323  T
Q  270 cgcaatcgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgacatcgtaatatgaaccgaaatctttcatcgtttc 369  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  17831324 cgcaaccgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgtcatcgtaatatgaaccgaaatctttcgtcgtttc 17831423  T
Q  370 tctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtg 469  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831424 tctctcccttcatcgacgatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtg 17831523  T
Q  470 aattttctctcaaggtaatagttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttat 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831524 aattttctctcaaggtaatagttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttat 17831623  T
Q  570 ggagtcaatcattcttcactattctcagtttatctccctctccaacgcttaagatgactcagattttcaaaaatcggaggtattgaatgttcaggtattc 669  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17831624 ggagtcaatcattcttcattattctcagtttatctccctctccaacgcttaagatgactcagattttaaaaaatcggaggtattgaatgttcaggtattc 17831723  T
Q  670 ccaaaattgttcatcttttcactttcaccttcttcttcatttcggtgatgat 721  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17831724 ccaaaattgttcatcttttcactttcaccttcttcatcatttcggtgatgat 17831775  T

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Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 173 - 717
Target Start/End: Original strand, 7135282 - 7135805
Alignment:
Q  173 tcacgccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctcccgcgacggcgccaaatttggccatttcatctccgccgc 272  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   |||| |||||| ||||||||||||||||||||     
T  7135282 tcacgccatttttctctgatatgagaaattcatcttccattttcagtccctcttctctctcctgtagcggcaccaaatctggccatttcatctccgccgt 7135381  T
Q  273 aatcgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgacatcgtaatatgaaccgaaatctttcatcgtttctct 372  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  7135382 aaccgtgattctgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgtcatcgtaatatgaaccgaaatcttccgtcgtttctct 7135481  T
Q  373 ctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtgaat 472  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||    
T  7135482 ctcccttcatcaacaatgcttcttctgttgctaaatctcaaacatccatcatacttaatgctctattccatcgttgttcagatttgttgattttgtgaat 7135581  T
Q  473 tttctctcaaggtaatagttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatgga 572  Q
    ||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135582 tttctctcaaggtaatagtt---------------------ttttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatgga 7135660  T
Q  573 gtcaatcattcttcactattctcagtttatctccctctccaacgcttaagatgactcagattttcaaaaatcggaggtattgaatgttcaggtattccca 672  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  7135661 gtcaatcattcttcactattctcattttttctccctctccaacgcttgagatgactaagattttcaaaaatcggatgtattgaatgttcaggtattccca 7135760  T
Q  673 aaattgttcatcttttcactttcaccttcttcttcatttcggtga 717  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  7135761 aaattgttcatcttttcactttcaccttcttctccatttcggtga 7135805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 463 - 590
Target Start/End: Complemental strand, 52525515 - 52525386
Alignment:
Q  463 ttttgtgaattttctctcaaggtaatagttttaccctttctatg--aattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctag 560  Q
    |||||||||||||||||||||||||| ||||||||||||||||   |||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  52525515 ttttgtgaattttctctcaaggtaatcgttttaccctttctatagaaattgaatttcgtttctctgaatttcagttctcagtttcactttcatcccctag 52525416  T
Q  561 aatccttatggagtcaatcattcttcacta 590  Q
    || | |||||||||||||||||||| ||||    
T  52525415 aacctttatggagtcaatcattctttacta 52525386  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 361 - 521
Target Start/End: Complemental strand, 22292316 - 22292156
Alignment:
Q  361 catcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgtt 460  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||| ||||| | |||||||| |||||||||| |   ||||| |  |||||||||||| |    
T  22292316 catcgttgctctctccgttcatcaacaaagcttctcccgttgctgaatctaagacatccattatgcttaatgctcccttccaccactgttcagatttgct 22292217  T
Q  461 gattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 521  Q
     |||||| ||| |||||||||||||||| | ||| ||||||||||| |||||||| |||||    
T  22292216 aattttgcgaagtttctctcaaggtaatcgcttttccctttctatgtattgaattgtgttt 22292156  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 638 - 713
Target Start/End: Complemental strand, 52525386 - 52525311
Alignment:
Q  638 aaaaatcggaggtattgaatgttcaggtattcccaaaattgttcatcttttcactttcaccttcttcttcatttcg 713  Q
    |||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  52525386 aaaaattggaggtgttgaatgttcaggcattcccaaaattgttcatcttttcactttcaccttcttctccatttcg 52525311  T

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Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 26493150 - 26493285
Alignment:
Q  19 acattgtagagcctatcaagatttggaacaaaggggacacacacttgaagtatttgcagagtgggacgatgatagtgcatcaa---------gatcaaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||         | ||||||    
T  26493150 acattgtagagcctatcaagatttggaacaaaggggacacacacttgaaggatttgcagagtgggacgatgatagtgtatcaatacaatcgggctcaaat 26493249  T
Q  110 ttggttgtgtcttcttcttttgatatactatcatca 145  Q
    ||||||||||||||||||||||||||||||||||||    
T  26493250 ttggttgtgtcttcttcttttgatatactatcatca 26493285  T

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Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 33865884 - 33865939
Alignment:
Q  178 ccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33865884 ccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctc 33865939  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 19079622 - 19079759
Alignment:
Q  19 acattgtagagcctatcaagatttggaacaaaggggacac--acacttgaagtatttgcagagtgggacgatgatagtgcatcaa---------gatcaa 107  Q
    |||| ||||||  ||||||| ||||||||| ||| |||||  |||||||||| ||||||||||||||||||| |||||| |||||         | ||||    
T  19079622 acatcgtagagtatatcaagttttggaacagaggcgacacacacacttgaaggatttgcagagtgggacgattatagtgtatcaaaacaatcgggctcaa 19079721  T
Q  108 atttggttgtgtcttcttcttttgatatactatcatca 145  Q
    |||| |  ||||||||||||||||||||||||||||||    
T  19079722 atttagccgtgtcttcttcttttgatatactatcatca 19079759  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 436 - 495
Target Start/End: Complemental strand, 37362273 - 37362214
Alignment:
Q  436 tattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagtttta 495  Q
    ||||||||| ||||||| ||||||| ||||| |||||||||||||||||| || ||||||    
T  37362273 tattccatcattgttcatatttgtttattttatgaattttctctcaaggttatcgtttta 37362214  T

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Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 11075171 - 11075226
Alignment:
Q  178 ccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11075171 ccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctc 11075226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 447 - 521
Target Start/End: Original strand, 10093043 - 10093117
Alignment:
Q  447 tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 521  Q
    |||||||||||| | ||||||  || |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  10093043 tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt 10093117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 521
Target Start/End: Complemental strand, 33044989 - 33044908
Alignment:
Q  440 ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 521  Q
    |||||| |||||||||||| | ||||||  || |||||||||||||||||| ||| || ||||||||||||||||| |||||    
T  33044989 ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccttttctatgaattgaattgtgttt 33044908  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 23216810 - 23216755
Alignment:
Q  178 ccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctc 233  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23216810 ccatttttctctgatatgagaaattcatcttccattttcagtccctcttctctctc 23216755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 30765831 - 30765777
Alignment:
Q  178 ccatttttctctgatctgagaaattcatcttccattttcagtccctcttctctctc 233  Q
    |||||||||||||||  |||||| |||||||||| |||||||||||||||||||||    
T  30765831 ccatttttctctgatgagagaaagtcatcttcca-tttcagtccctcttctctctc 30765777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 521
Target Start/End: Original strand, 17682380 - 17682425
Alignment:
Q  476 ctctcaaggtaatagttttaccctttctatgaattgaattttgttt 521  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||    
T  17682380 ctctcaaggtaatcgtttttccctttctatgaattgaattgtgttt 17682425  T

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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 440 - 521
Target Start/End: Original strand, 5658334 - 5658415
Alignment:
Q  440 ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 521  Q
    ||||||||||||||||||| | ||||||  || |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  5658334 ccatcgttgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt 5658415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 447 - 520
Target Start/End: Complemental strand, 14677558 - 14677485
Alignment:
Q  447 tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt 520  Q
    |||||||||||| | ||||||  || |||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  14677558 tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgtt 14677485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 521
Target Start/End: Complemental strand, 31100415 - 31100334
Alignment:
Q  440 ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 521  Q
    |||||| |||||||||||| | ||||||  || |||||||||||||||||| |||  | ||||||||||||||||| |||||    
T  31100415 ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagctttttcttttctatgaattgaattgtgttt 31100334  T

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Target: scaffold0045 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 521
Target Start/End: Complemental strand, 11176 - 11096
Alignment:
Q  441 catcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 521  Q
    |||||||||||| ||||| | ||||||  || |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  11176 catcgttgttcaaatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt 11096  T

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Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 35639 - 35719
Alignment:
Q  440 ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt 520  Q
    |||||| |||||||||||| | ||||||  || ||| |||||||||||||| ||| |||||||||||||||||||| ||||    
T  35639 ccatcgctgttcagatttgctaattttgcaaagtttatctcaaggtaatagcttttccctttctatgaattgaattgtgtt 35719  T

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