View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_40 (Length: 370)
Name: NF16632_low_40
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 6 - 352
Target Start/End: Original strand, 23551829 - 23552175
Alignment:
| Q |
6 |
aataacatattctattgtagatcaattaatgaagtcatgtgagaggagcaagtttggatttacttgaccatttcattaaaacttgtccttctttggagtt |
105 |
Q |
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| T |
23551829 |
aataacatattctattgtagatcatttaatgaagtcatgtgagaggagcaagtttgaatttatttgaccatttcattaaaacttgtccttctttagagtt |
23551928 |
T |
|
| Q |
106 |
gtatagtgtgtccattagtttctgacttatttgaataaatttaaatttgtttattataactgtcttataggctgttgtttttacggaagtcattcttgag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23551929 |
gtatagtgtgtccattagtttctgacttatttgaataaatttaaatttgtttattataactgtcttataggctgttgtttttacggaagtcagtcttgag |
23552028 |
T |
|
| Q |
206 |
aaagctgttgagttcaatgattactgccacagtcatcagcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgatt |
305 |
Q |
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| T |
23552029 |
atagctgttgagttcaatgattactgccacagtcatcggcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgatt |
23552128 |
T |
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| Q |
306 |
ttgggcctgagtttactgttgttgatgtcgatggagaggaactacat |
352 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
23552129 |
ttgggcctgagtttactgttgttgatgtcaatggagaggaaccacat |
23552175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 6 - 352
Target Start/End: Complemental strand, 30834772 - 30834425
Alignment:
| Q |
6 |
aataacat-attctattgtagatcaattaatgaagtcatgtgagaggagcaagtttggatttacttgaccatttcattaaaacttgtccttctttggagt |
104 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||| |||||| | ||| |
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| T |
30834772 |
aataacatcattctattgtagatcaattaatgaagtcatgtaagaggagcaagtttgaatttacttgaccatttcagtagaacttgtacttcttcgtagt |
30834673 |
T |
|
| Q |
105 |
tgtatagtgtgtccattagtttctgacttatttgaataaatttaaatttgtttattataactgtcttataggctgttgtttttacggaagtcattcttga |
204 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
30834672 |
tgtatagtgcgtccatttgtttctgacttatttgaataaatttaaatatgtttattataactgtcttgtaggctgttgtttttaccgaagtcagtcttga |
30834573 |
T |
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| Q |
205 |
gaaagctgttgagttcaatgattactgccacagtcatcagcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30834572 |
gaaagctgttgagttcaatgattactgccacagtcatcagcctccaattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgat |
30834473 |
T |
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| Q |
305 |
tttgggcctgagtttactgttgttgatgtcgatggagaggaactacat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30834472 |
tttgggcctgagtttactgttgttgatgtcgatggagaggaaccacat |
30834425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 352
Target Start/End: Complemental strand, 30815760 - 30815414
Alignment:
| Q |
6 |
aataacat-attctattgtagatcaattaatgaagtcatgtgagaggagcaagtttggatttacttgaccatttcattaaaacttgtccttctttggagt |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||| |||||||||||| ||| |
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| T |
30815760 |
aataacatcattctattgtagatcaattaatgaagtcatgtgagacgagcaatttta-atttacttgaccatttctgtaaaacctgtccttctttgtagt |
30815662 |
T |
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| Q |
105 |
tgtatagtgtgtccattagtttctgacttatttgaataaatttaaatttgtttattataactgtcttataggctgttgtttttacggaagtcattcttga |
204 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
30815661 |
tgtatagtgcgtccatttgtttctgacttatttgaataaatttaaatttgtttattataactgtcttgtaggctgttgtttttaccgaagtcagtcttga |
30815562 |
T |
|
| Q |
205 |
gaaagctgttgagttcaatgattactgccacagtcatcagcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30815561 |
gaaagctgttgagttcaatgattactgccacagtcatcagcctcctattgcttttattaaaactgaagttagaggtctttttggttccgtgttttgtgat |
30815462 |
T |
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| Q |
305 |
tttgggcctgagtttactgttgttgatgtcgatggagaggaactacat |
352 |
Q |
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||||| ||||||||||| ||||||||||| || || ||||||| |||| |
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| T |
30815461 |
tttggacctgagtttacagttgttgatgttgacggggaggaaccacat |
30815414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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