View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_46 (Length: 354)
Name: NF16632_low_46
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 19213802 - 19214125
Alignment:
| Q |
15 |
cataggaaagtgaaagtgaccttcaagagaatcttttagagggccaacaaactcagcaaactcggtttcttcaagagctttgaacacatcttcagcattg |
114 |
Q |
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| T |
19213802 |
cataggaaagtgaaagtgaccttcaagagaatcttttagagggccaacaaactcagcaaactcggtttcttcaagagctttgaacacatcttcagcattg |
19213901 |
T |
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| Q |
115 |
ataatctgcctctttgactccctacatatatcattagccctgcaaatacaaacaacaccaatcactctttaacattcttctacctcaaaaagtttccttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19213902 |
ataatctgcctctttgactccctacatatatcattagccctgcaaatacaaacaacaccaatcactctttaacattcttctacctcaaaaagttcccttt |
19214001 |
T |
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| Q |
215 |
tttataatcacccaggaatcaatttccaaaatcctctacaaaacctccccaatttcctccaaaatagccaatacccattgcaaaattttcccaattgcct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19214002 |
tttataatcacccaggaatcaatttccaaaatcctctacaaaacctccccaatttcctccaaaataaccaatacccattgcaaaattttcccaattgcct |
19214101 |
T |
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| Q |
315 |
ccaaactacaaaccctaattttta |
338 |
Q |
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|||||||||||||||||||||||| |
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| T |
19214102 |
ccaaactacaaaccctaattttta |
19214125 |
T |
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