View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_49 (Length: 349)
Name: NF16632_low_49
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_49 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 43484632 - 43484980
Alignment:
| Q |
1 |
atcaaagtctagaaagaataatatgcatgagcaggtgatttgtatgaatgaggtctttcaactaattaataaggaccccattagcatgagggaagactca |
100 |
Q |
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| T |
43484632 |
atcaaagtctagaaagaataatatgcatgagcaggtgatttgtatgaatgaggtctttcaactaattaataaggaccccattagcatgagggaagactca |
43484731 |
T |
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| Q |
101 |
gatgagagcaatgagaccaagttgccttggcccatgggcaagagaaaatgcaatgcaccatatcttcatcatccacatcacacacaatataatggatcaa |
200 |
Q |
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| T |
43484732 |
gatgagagcaatgagaccaagttgccttggcccatgggcaagagaaaatgcaatgcaccatatcttcaacatccacatcacacacaacataatggatcaa |
43484831 |
T |
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| Q |
201 |
agcattaaagataattgataaaatcattgcaagagacaacgatggatcaagaaattttagatcacggaaacaagattatagactataatagttacataaa |
300 |
Q |
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| T |
43484832 |
agcattaaagataattgataaaatcattgcaagagacagcgacggatcaagaaattttagctcacggaaacaagattatagactataatagttatataaa |
43484931 |
T |
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| Q |
301 |
attaacgaaagaaatttagagaaagaaaatgtgaaatcactctaaattc |
349 |
Q |
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| T |
43484932 |
attaacggaagaaatttagagaaagaaaacgtgaaatcactctaaattc |
43484980 |
T |
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