View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_5 (Length: 665)

Name: NF16632_low_5
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_5
NF16632_low_5
[»] chr3 (2 HSPs)
chr3 (17-655)||(32410321-32410955)
chr3 (19-209)||(6905498-6905688)
[»] chr8 (13 HSPs)
chr8 (17-226)||(3262284-3262493)
chr8 (17-225)||(3286170-3286378)
chr8 (99-226)||(7164312-7164439)
chr8 (112-226)||(13808973-13809087)
chr8 (105-215)||(3391198-3391308)
chr8 (105-220)||(3429631-3429750)
chr8 (135-224)||(3315317-3315406)
chr8 (94-209)||(3407006-3407121)
chr8 (18-215)||(3398185-3398385)
chr8 (17-53)||(3267082-3267118)
chr8 (159-223)||(3364652-3364716)
chr8 (18-103)||(31176183-31176268)
chr8 (181-229)||(3266915-3266963)
[»] chr2 (1 HSPs)
chr2 (17-226)||(14766595-14766804)
[»] chr7 (1 HSPs)
chr7 (17-224)||(8371300-8371507)
[»] chr5 (5 HSPs)
chr5 (18-222)||(20838968-20839175)
chr5 (18-222)||(20812613-20812820)
chr5 (131-209)||(12598805-12598883)
chr5 (159-215)||(15803394-15803450)
chr5 (182-222)||(30418272-30418312)
[»] scaffold0468 (1 HSPs)
scaffold0468 (110-209)||(5838-5937)
[»] chr6 (1 HSPs)
chr6 (18-66)||(31059626-31059674)


Alignment Details
Target: chr3 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 17 - 655
Target Start/End: Complemental strand, 32410955 - 32410321
Alignment:
Q  17 acaatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacgtcacatgcatca 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32410955 acaatgccgctcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacgtcacatgcatca 32410856  T
Q  117 caattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttcta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32410855 caattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttcta 32410756  T
Q  217 tatcctcttgacttctccgcctttattttataaatatgttaaatcataattcccacacggagcatttacacatcaacgttttacttctcaataattttac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32410755 tatcctcttgacttctccgcctttattttataaatatgttaaatcataattcccacacggagcatttacacatcaacgttttacttctcaataattttac 32410656  T
Q  317 tttgcacttgaaataccgaaacccaaatcagcttgatatggcaataaatgggtgatgattgagctggagtgactatggaaaacaggcaaattgtcttgag 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32410655 tttgcacttgaaataccgaaacccaaatcagcttgatatggcaataaatgggtgatgattgagctggagtaactatggaaaacaggcaaattgtcttgag 32410556  T
Q  417 ttgtgctagcagaaaatgtagcatatggttgcatggtagaacaggtagaaaatgaatgacgcaggacaaaggatgctctgcagctacaattgaggatgcc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32410555 ttgtgctagcagaaaatgtagcatatggttgcatggtagaacaggtacaaaatgaatgacgcaggacaaaggatgctctgcagctacaattgaggatgcc 32410456  T
Q  517 ccccttttgagtcttaaattacagaacccttatatatatgaaatttaatgatataacttgttgattgacataaaatcatgagggaaaaagattcttattt 616  Q
    ||| |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32410455 ccctttttgagtcttaaattacagaaccctt----atatgaaatttaatgatataacttgttgattgacataaaatcatgagggaaaaagattcttattt 32410360  T
Q  617 attaggtcaaatttgatttgtacagtttttattcctttg 655  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32410359 attaggtcaaatttgatttgtacagtttttattcctttg 32410321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 6905688 - 6905498
Alignment:
Q  19 aatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacgtcacatgcatcaca 118  Q
    ||||||| |||  ||||||||||| |||| |||||  |||  |||||| ||||| ||||| ||| ||  ||||  | | |||||| |||||||||||| |    
T  6905688 aatgccaatcagtgattcaactaattcaaaaattaacaagttttcttgatggtctatatggtgcaaatcttactgaatcggaaacatcacatgcatcaaa 6905589  T
Q  119 attctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtt 209  Q
    | ||||  ||  ||| ||||  || |||||||||| |||||||||||||||||||||  | |||||||||||||||||| |||||||||||    
T  6905588 aatctcggatatttccttgaaatctcttttgattacaatgggaagttgccacatagtcgtcgatactcttggcaagagcttatcacaggtt 6905498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 3262493 - 3262284
Alignment:
Q  17 acaatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacgtcacatgcatca 116  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| |||||  || |||||  | |||||  | ||||||||||||    
T  3262493 acaatgccgctcaaagattcaactaactcgagaattacgaagaattcttgatgatcaatgtgatgtaaattttactgaattggagtcatcacatgcatca 3262394  T
Q  117 caattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttcta 216  Q
    ||| ||||||||| ||| | ||| ||||| ||||||||||| |||||||||||| |||| ||  | |||||||| |||||||||||||||||| |||||     
T  3262393 caagtctcaaatctttcctcgagatcgctattgattagaataggaagttgccacgtagtcatcaaaactcttggaaagagcatatcacaggttccttctc 3262294  T
Q  217 tatcctcttg 226  Q
    ||||||||||    
T  3262293 tatcctcttg 3262284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 3286378 - 3286170
Alignment:
Q  17 acaatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacgtcacatgcatca 116  Q
    ||||| || |||| |||||||||| ||||||||| ||||  ||||||||| || ||||||||||   |   |||||||  ||||||| ||||||||||||    
T  3286378 acaattccgctcagagattcaacttactcaagaactacggggaattcttgatgatcaatatgatattagtgttaccaaagtggaaacatcacatgcatca 3286279  T
Q  117 caattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttcta 216  Q
    ||| ||||||||| ||||||||| || ||||||||| ||||||||| || ||||||| | |||||  ||||| |||||||||||||||||||| ||||      
T  3286278 caaatctcaaatccttctttgagatcacttttgattggaatgggaaatttccacatattcattgaggctcttagcaagagcatatcacaggttccttccc 3286179  T
Q  217 tatcctctt 225  Q
    |||||||||    
T  3286178 tatcctctt 3286170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 7164439 - 7164312
Alignment:
Q  99 gaaacgtcacatgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagca 198  Q
    ||||| |||||| ||||| || ||||||||| ||| ||||| || ||||||||| ||||||||||||| |||||| | |||||||||| |||||||||||    
T  7164439 gaaacatcacattcatcagaaatctcaaatctttccttgagatcacttttgattggaatgggaagttgtcacataatcattgatactcgtggcaagagca 7164340  T
Q  199 tatcacaggtttcttctatatcctcttg 226  Q
    |||| ||||||  |||| ||||||||||    
T  7164339 tatcccaggttctttctctatcctcttg 7164312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 13808973 - 13809087
Alignment:
Q  112 catcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttc 211  Q
    |||||||| ||||||| | | |||||||  ||||||||||| |||| |||||||||||||| || ||||||| |||| ||| ||||||||||||||||      
T  13808973 catcacaaatctcaaaccttcctttgagaccgcttttgattggaataggaagttgccacattgtcattgatattcttagcaggagcatatcacaggttct 13809072  T
Q  212 ttctatatcctcttg 226  Q
    |||| ||||||||||    
T  13809073 ttctctatcctcttg 13809087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 3391308 - 3391198
Alignment:
Q  105 tcacatgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcac 204  Q
    ||||||||||||||  | ||  ||||||| ||||| || ||||||||| ||||||||| |||||||||||| ||  ||| |||||| |||||| ||||||    
T  3391308 tcacatgcatcacacatttcggatcattccttgagatctcttttgattggaatgggaaattgccacatagtcatcaatattcttgggaagagcttatcac 3391209  T
Q  205 aggtttcttct 215  Q
    ||||| |||||    
T  3391208 aggttccttct 3391198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 3429631 - 3429750
Alignment:
Q  105 tcacatgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacata----gttattgatactcttggcaagagcata 200  Q
    |||||||||||| || | || |||| ||  ||||| || ||| ||||| ||||||||||||||||||||    || ||||||||||||||||||||  ||    
T  3429631 tcacatgcatcagaaatgtcgaatcttttcttgagatctcttatgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagttta 3429730  T
Q  201 tcacaggtttcttctatatc 220  Q
    ||||||||| ||||| ||||    
T  3429731 tcacaggttccttctctatc 3429750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 3315317 - 3315406
Alignment:
Q  135 ttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttctatatcctct 224  Q
    ||||| || |||||| || |||| ||||||||||||||||| ||  |||||||| | |||||| ||||| ||||| ||||||||||||||    
T  3315317 ttgagatctcttttgtttggaatcggaagttgccacatagtcatcaatactcttcggaagagcttatcagaggttccttctatatcctct 3315406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 3407121 - 3407006
Alignment:
Q  94 agttggaaacgtcacatgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaa 193  Q
    |||||||||  |||||||| |||||| ||||| ||| ||| |||   || ||||||||| |||||||||||| ||||| ||| |  || |||||||||||    
T  3407121 agttggaaatatcacatgcttcacaaatctcagatctttccttgcaatctcttttgattggaatgggaagttaccacaaagtcaacgagactcttggcaa 3407022  T
Q  194 gagcatatcacaggtt 209  Q
    |||| |||| ||||||    
T  3407021 gagcttatcgcaggtt 3407006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 3398385 - 3398185
Alignment:
Q  18 caatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttgga---aacgtcacatgcat 114  Q
    |||||||| ||| ||| |||||| |||||||||||| ||||| || ||| || || |||||||| ||| |||||  |||||||   ||| ||||||| |     
T  3398385 caatgccagtcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggac 3398286  T
Q  115 cacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttc 214  Q
      ||| || |||||| ||| ||||  ||  || ||||| |||||||||||| ||| ||||| || ||||||||||  |||||| || |||||||| ||||    
T  3398285 accaaatcacaaatctttccttgaaatcaattgtgattggaatgggaagttcccaaatagtcatggatactcttgataagagcttagcacaggttccttc 3398186  T
Q  215 t 215  Q
    |    
T  3398185 t 3398185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 3267118 - 3267082
Alignment:
Q  17 acaatgccactcaaagattcaactaactcaagaatta 53  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3267118 acaatgccactcaaagaatcaactaactcaagaatta 3267082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 3364652 - 3364716
Alignment:
Q  159 ggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttctatatcctc 223  Q
    |||||||||||||| || ||  | |||||| |||||||| ||||||||||||||||| |||||||    
T  3364652 ggaagttgccacattgtcatcaacactcttcgcaagagcttatcacaggtttcttctctatcctc 3364716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 31176183 - 31176268
Alignment:
Q  18 caatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaac 103  Q
    ||||| |||||| ||| |||||| |||||||||||| ||||| || ||| || || |||||||| ||| |||||  ||||||||||    
T  31176183 caatgtcactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaac 31176268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 3266963 - 3266915
Alignment:
Q  181 atactcttggcaagagcatatcacaggtttcttctatatcctcttgact 229  Q
    ||||||||||||| ||||| ||||||||| ||||| |||| ||||||||    
T  3266963 atactcttggcaacagcatgtcacaggttccttctctatcttcttgact 3266915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 14766804 - 14766595
Alignment:
Q  17 acaatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacgtcacatgcatca 116  Q
    |||||||||||| |||||||||||||| |  ||||||  |||| || ||| || || | ||||||| || |||||  |  ||||||| |||||| |||||    
T  14766804 acaatgccactcgaagattcaactaacccgggaattaacaagatttattgatgatctacatgatgcaaattttactgaactggaaacatcacatacatca 14766705  T
Q  117 caattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttcta 216  Q
    ||| ||||   || ||| |||||||| ||||||||| |||||||||||| | ||| ||||||  ||||||||||||| ||| ||||||||||| |||||     
T  14766704 caaatctctgttctttcgttgaggtcacttttgattggaatgggaagttacgacacagttataaatactcttggcaaaagcttatcacaggttccttctc 14766605  T
Q  217 tatcctcttg 226  Q
    ||||||||||    
T  14766604 tatcctcttg 14766595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 8371507 - 8371300
Alignment:
Q  17 acaatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacgtcacatgcatca 116  Q
    ||||||||| |||| |||||||||||| |  |||||| ||||| |||||| || || ||||||||| || |||||  |  ||||||| |||||  |||||    
T  8371507 acaatgccagtcaatgattcaactaacccgggaattaagaagatttcttgatgatctatatgatgcaaattttactgaactggaaacatcacacacatca 8371408  T
Q  117 caattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttcta 216  Q
    ||| ||||   || ||| || || || ||||||||| ||||||| ||||  |||| ||| ||  |||||||||||||||| |||||||||||| |||||     
T  8371407 caaatctctgttctttcattaagatcacttttgattggaatgggtagttatcacacagtcataaatactcttggcaagagtatatcacaggttccttctc 8371308  T
Q  217 tatcctct 224  Q
    ||| ||||    
T  8371307 tatgctct 8371300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 20838968 - 20839175
Alignment:
Q  18 caatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacg---tcacatgcat 114  Q
    |||||||||||| ||| |||||| |||||||||||| ||||| || ||| || || |||||||| ||| |||||  ||||||||||    ||||||| |     
T  20838968 caatgccactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatggac 20839067  T
Q  115 cacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttc 214  Q
      ||| ||  ||||| ||  ||||  || ||| ||||| |||||||||||| ||| ||||| |  |||||||||||||||||| || |||||||||||||    
T  20839068 accaaatcaaaaatcttttcttgaaatcacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggtttcttc 20839167  T
Q  215 tatatcct 222  Q
    | ||||||    
T  20839168 tttatcct 20839175  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 20812613 - 20812820
Alignment:
Q  18 caatgccactcaaagattcaactaactcaagaattacgaagaattcttggtggtcaatatgatgcgaactttaccaagttggaaacg---tcacatgcat 114  Q
    |||||||||||| ||| |||||| |||||||||||| |||||  | ||| || || |||||||| ||| |||||  ||||||||||    |||||||||     
T  20812613 caatgccactcagagaatcaacttactcaagaattaagaagatatattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatgcac 20812712  T
Q  115 cacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttc 214  Q
      ||| ||  ||||| ||| ||||  |  ||| ||||| |||||||||||| ||| ||||| |  |||||||||||||||||| || |||||||| ||||    
T  20812713 accaaatcgaaaatctttccttgaaattacttgtgattggaatgggaagttcccaaatagtcacagatactcttggcaagagcttagcacaggttccttc 20812812  T
Q  215 tatatcct 222  Q
    | ||||||    
T  20812813 tttatcct 20812820  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 12598883 - 12598805
Alignment:
Q  131 ttctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtt 209  Q
    ||||||||| || ||||||||| ||||||| |||| |||  | || || || ||||||||||||| |||||||||||||    
T  12598883 ttctttgagatcacttttgattggaatggggagtttccaacttgtcatcgacactcttggcaagaacatatcacaggtt 12598805  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 15803394 - 15803450
Alignment:
Q  159 ggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttct 215  Q
    |||||||| ||||| || ||  ||||||||||||||||| |||||| ||||||||||    
T  15803394 ggaagttgtcacattgtcatcaatactcttggcaagagcttatcacgggtttcttct 15803450  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 30418272 - 30418312
Alignment:
Q  182 tactcttggcaagagcatatcacaggtttcttctatatcct 222  Q
    |||||||||||||||| ||||||||||| ||||| ||||||    
T  30418272 tactcttggcaagagcttatcacaggttccttctctatcct 30418312  T

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Target: scaffold0468 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 5937 - 5838
Alignment:
Q  110 tgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatcacaggtt 209  Q
    |||||||||| ||||  ||| ||| ||||  || |||||||||| |||||||||||||||||||||| |  || |||||||||| ||| |||||||||||    
T  5937 tgcatcacaaatctcggatctttccttgaaatctcttttgattacaatgggaagttgccacatagttgtcaatgctcttggcaatagcttatcacaggtt 5838  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 31059674 - 31059626
Alignment:
Q  18 caatgccactcaaagattcaactaactcaagaattacgaagaattcttg 66  Q
    |||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  31059674 caatgccactcagagattcaactaactcaagaattaagaagatttcttg 31059626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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