View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_53 (Length: 331)
Name: NF16632_low_53
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_53 |
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| [»] scaffold0208 (1 HSPs) |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 34 - 313
Target Start/End: Complemental strand, 43774690 - 43774416
Alignment:
| Q |
34 |
tggaggagaagaaataatgtgttatgtacgagattatgaagaccataaccttatataggatgcgagccattgacatcaccttccattaatgatcaactta |
133 |
Q |
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| T |
43774690 |
tggaggagaagaaataatgtgttatgtacgatattatgaagaccataaccttatataggatgcgagccattgacatcaccttccattaatgatcaactta |
43774591 |
T |
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| Q |
134 |
catacacatatattaaactcatatcaattaattaaatgattaattatcgaaatataaatctaaattgtctttttacttaatttaatcattattcaaataa |
233 |
Q |
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| T |
43774590 |
catacacatatattaaactcatatcaattaattaaatgattaattatcgaaatataaatctaaattgtctttttac-----ttgatcattattcaaataa |
43774496 |
T |
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| Q |
234 |
aactttaattgataaataactaatgtaaattttattctgatatatgcctgaatatataaaaatattccaacaacactaac |
313 |
Q |
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| T |
43774495 |
aactttaattgataaataactaatgtaaattttattctgatatatgcctcaatatataaaaatattccaacaacactaac |
43774416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 6272 - 6166
Alignment:
| Q |
153 |
catatcaattaattaaatgattaattatcgaaa-tataaatctaaattgtctttttacttaatttaatcattattcaaataaaactttaa-ttgataaat |
250 |
Q |
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| T |
6272 |
catatcaactaattaaataattaattatccaaaatagaaatctaattagccttattacttaatttgatcactaatcaattaaggctttaaattgataaat |
6173 |
T |
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| Q |
251 |
aactaat |
257 |
Q |
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| T |
6172 |
aactaat |
6166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 25343375 - 25343308
Alignment:
| Q |
153 |
catatcaattaattaaatgattaattatcgaaatataaatctaaattgtctttttacttaatttaatca |
221 |
Q |
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| T |
25343375 |
catatcaactaattaaataattaattatccaaa-ataaatctaattagccttattacttaatttaatca |
25343308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 38178 - 38072
Alignment:
| Q |
153 |
catatcaattaattaaatgattaattatcgaaatataaatctaaatt-gtctttttacttaatttaatcattattcaaataaaactt-taattgataaat |
250 |
Q |
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| T |
38178 |
catatcaattaattaaataattaattattcgaatagaaatctaaattaaccttgttacttaatttgatcactattcaattaaggtttcaaattgataaat |
38079 |
T |
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| Q |
251 |
aactaat |
257 |
Q |
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||||||| |
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| T |
38078 |
aactaat |
38072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 1077994 - 1077925
Alignment:
| Q |
153 |
catatcaattaattaaatgattaattatcgaaa-tataaatctaaattgtctttttacttaatttaatca |
221 |
Q |
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| T |
1077994 |
catatcaactaattaaataattaattatccaaaatagaaatctaattagtcttattacttaatttgatca |
1077925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 16361783 - 16361739
Alignment:
| Q |
152 |
tcatatcaattaattaaatgattaattatcgaaatataaatctaa |
196 |
Q |
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| T |
16361783 |
tcatatcaattaattatataattaattatctaaatagaaatctaa |
16361739 |
T |
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