View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_57 (Length: 314)
Name: NF16632_low_57
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 9934178 - 9934463
Alignment:
| Q |
20 |
tgaggctttcaactcttgtttctcctcaactgaacctcgaaaaggctccgatattctcgttgaagcacttgagcgtcaaggcataaccaccgtcttcgct |
119 |
Q |
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| T |
9934178 |
tgaggctttcaactcttgtttctcctcaactgaacctcgaaaaggctccgatattctcgttgaagcacttgagcgtcaaggcataaccaccgtcttcgct |
9934277 |
T |
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| Q |
120 |
taccctggcggtgcttccgcagagatccaccaagctctaacccgctctaaaacaatccgaaacatacttccccgccacgaacaaggtggaatattcgcgg |
219 |
Q |
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| T |
9934278 |
taccctggcggtgcttccgcagagatccaccaagctctaacccgctccaaaacaattcgaaacatacttccccgccacgaacaaggtggaatattcgcgg |
9934377 |
T |
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| Q |
220 |
ctgagggttacgctcgctcctccagtatccctggtgtttgcatagccacctccggtccgggtgctactaacttaatcagtggcctc |
305 |
Q |
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| T |
9934378 |
ctgagggttacgctcgctcctccagtatccctggtgtttgcatagccacctccggtccgggtgctactaacttaatcagtggcctc |
9934463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 3471780 - 3471874
Alignment:
| Q |
195 |
cacgaacaaggtggaatattcgcggctgagggttacgctcgctcctccagtatccctggtgtttgcatagccacctccggtccgggtgctactaa |
289 |
Q |
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||||||||||||||||| ||||| || |||||||||||||| ||||| || | |||||||| ||||| ||||| ||||| || ||||| ||||| |
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| T |
3471780 |
cacgaacaaggtggaatcttcgctgccgagggttacgctcgttcctctggtctacctggtgtctgcatcgccacttccggccctggtgccactaa |
3471874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 45476127 - 45476412
Alignment:
| Q |
20 |
tgaggctttcaactcttgtttctcctcaactgaacctcgaaaaggctccgatattctcgttgaagcacttgagcgtcaaggcataaccaccgtcttcgct |
119 |
Q |
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|||| |||||| |||| |||||||||| || |||| |||||||||||||| |||||||||||||| | || || ||||| | |||| |||||||||| |
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| T |
45476127 |
tgagcctttcacctctcgtttctcctccacccaaccccgaaaaggctccgacattctcgttgaagccttagaacgcgaaggcgttaccaacgtcttcgct |
45476226 |
T |
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| Q |
120 |
taccctggcggtgcttccgcagagatccaccaagctctaacccgctctaaaacaatccgaaacatacttccccgccacgaacaaggtggaatattcgcgg |
219 |
Q |
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||||||||||| |||||| ||||||||||||||||| ||||| || ||||| ||||| |||||||| ||||| |||||||||||||| | ||||| | |
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| T |
45476227 |
taccctggcggcgcttccatggagatccaccaagctctcacccgttccaaaaccatccgtaacatactcccccgtcacgaacaaggtggtgtcttcgccg |
45476326 |
T |
|
| Q |
220 |
ctgagggttacgctcgctcctccagtatccctggtgtttgcatagccacctccggtccgggtgctactaacttaatcagtggcctc |
305 |
Q |
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| || || ||||||||||||||| || | || || ||||| || |||||||| ||||| ||||| || |||||| |||| |||||| |
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| T |
45476327 |
ccgaaggctacgctcgctcctccggtcttcccggcgtttgtatcgccacctctggtcccggtgccaccaacttagtcagcggcctc |
45476412 |
T |
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