View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_58 (Length: 313)
Name: NF16632_low_58
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 44166612 - 44166306
Alignment:
| Q |
16 |
tgaaaagaaaatgccatggaagcactttgacaccacctagttatagaagatgtt-----------aagggttgagtagtgatgttctgttatggagaggt |
104 |
Q |
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| T |
44166612 |
tgaaaagaaaatgccatggaagcactttgacaccacctagttatagaagatgttgcaggactcataagggttgagtagtgatgttctgttatggagaggt |
44166513 |
T |
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| Q |
105 |
tggctgcaaatttgagcttaagtagttattgatggtgttttaattagaagaagnnnnnnnntgatgaag---ggtggtggttgattggagaagaagacca |
201 |
Q |
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| T |
44166512 |
tggctgcaaatttgagcttaagtagttattgatggtgttttaattagaagaa-aaaaaaaatgatgaagggtggtggtggttgattggagaagaagacca |
44166414 |
T |
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| Q |
202 |
ttgaaattgctattaatttctcata-----atatatgg-----aatgtgttgattctttgattatctctctatatatct-----tcttctcatcaacaat |
286 |
Q |
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| T |
44166413 |
ttgaaattgctattaatttctcataataatatatatggaatataatgtgttgattctttgattatctctctatatatcttcttctcttctcatcaacaat |
44166314 |
T |
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| Q |
287 |
cccacacc |
294 |
Q |
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| T |
44166313 |
cccacacc |
44166306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 38304286 - 38304430
Alignment:
| Q |
77 |
gagtagtgatgttctgttatggagaggttggctgcaaatttgagcttaagtagttattgatggtgttttaattagaagaagnnnnnnnntgatgaagggt |
176 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || |||||| ||| |
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| T |
38304286 |
gagtagtgatgttctattatggagaggttggctgaaaatttgattttaagtagctattgatggtgttttaattagaaaaa------aaacgatgaa-ggt |
38304378 |
T |
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| Q |
177 |
ggtggttgattggagaagaagaccattgaaattgctattaatttctcataat |
228 |
Q |
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|||||| ||||||||||||| || |||| |||||||||| |||||||||||| |
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| T |
38304379 |
ggtggtagattggagaagaatactattggaattgctattgatttctcataat |
38304430 |
T |
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