View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_60 (Length: 301)
Name: NF16632_low_60
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 9629668 - 9629402
Alignment:
| Q |
20 |
caatattgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtgttaatgttatttatgttttcaatttcggtccattaataatta |
119 |
Q |
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| T |
9629668 |
caatattgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtgttaatgttatttatgttttcaattttggtccattaataatta |
9629569 |
T |
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| Q |
120 |
attatattttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacattttattaagat |
219 |
Q |
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| T |
9629568 |
attatattttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacattttattaagaa |
9629469 |
T |
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| Q |
220 |
aggttattaccatctagagacaagatcaagaatcagtgaatatctcttttctttttatgtctcacag |
286 |
Q |
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| T |
9629468 |
aggttattaccatctagagacaagatcaagaatcaatgaatatctcttttctttttatgtctcacag |
9629402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 41258571 - 41258637
Alignment:
| Q |
143 |
ttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacatt |
209 |
Q |
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| T |
41258571 |
ttatatagattggaattgaatgccaactgagtgctgaagaacttgctcaacaaatccagcaaacatt |
41258637 |
T |
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