View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_63 (Length: 294)
Name: NF16632_low_63
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 36495458 - 36495726
Alignment:
| Q |
16 |
ccttttatggttgttacattggcttctatcatttcaagccctaaatcattcatagtctccattaatttcttgaaccctcctctcttgttctcaaagatca |
115 |
Q |
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| T |
36495458 |
ccttttatggttgttacattggcttctatcatttcaagccctaaatcattcatagtctccattaatttcttgaaccctcctctcttgttctcaaagatca |
36495557 |
T |
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| Q |
116 |
tcttaacccatagcttatttccatccattttttccacttgaacctcttcctatagaaagcaaccacacaaagattgcttattaatagtagttattgataa |
215 |
Q |
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| T |
36495558 |
tcttaacccatagcttatttccatccattttttccacttgaacctcttcctatagaaagcaaccacacaaagattacttattaatagtagttatagataa |
36495657 |
T |
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| Q |
216 |
aaattcatttagttaattcatgaaagaaataatttatataaaatctgtatcccccattttttcatctct |
284 |
Q |
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| T |
36495658 |
aaattcatttagttaattcatgaaagaaataatttatataaaatctgtatcccccattttttcatctct |
36495726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 36478202 - 36478262
Alignment:
| Q |
130 |
ttatttccatccattttttccacttgaacctcttcctatagaaagcaaccacacaaagatt |
190 |
Q |
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| T |
36478202 |
ttatttccatccattgtttccacttgaacctctttctatagaaagtaaccacacaaagatt |
36478262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 36466833 - 36466931
Alignment:
| Q |
76 |
attaatttcttgaaccctcctctcttgttctcaaagatcatcttaacccatagcttatttccatccattttttccacttgaacctcttcctatagaaag |
174 |
Q |
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| T |
36466833 |
attaatttgttgaaccttcctcttttcttctcaatgagcaacttaatccatagcttattcccatcaacttttgctacctgcacctcttcctatagaaag |
36466931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 24055890 - 24055959
Alignment:
| Q |
22 |
atggttgttacattggcttctatcatttcaagccctaaatcattcatagtctccattaatttcttgaacc |
91 |
Q |
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| T |
24055890 |
atggttgtaacattggcttctatcatttcaaaccctacttcattcatagcgtccatttattttttgaacc |
24055959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 24055953 - 24055999
Alignment:
| Q |
153 |
ttgaacctcttcctatagaaagcaaccacacaaagattgcttattaa |
199 |
Q |
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| T |
24055953 |
ttgaacctcttcctatagaaagtaaccacacaaagattactaattaa |
24055999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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