View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_64 (Length: 293)

Name: NF16632_low_64
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_64
NF16632_low_64
[»] chr5 (15 HSPs)
chr5 (22-249)||(33112051-33112278)
chr5 (19-202)||(13956958-13957141)
chr5 (19-125)||(6273156-6273262)
chr5 (33-206)||(32383775-32383949)
chr5 (19-206)||(14351825-14352013)
chr5 (19-206)||(6459735-6459923)
chr5 (27-124)||(35456543-35456640)
chr5 (19-92)||(14635373-14635446)
chr5 (19-91)||(8761097-8761169)
chr5 (19-91)||(35758063-35758135)
chr5 (33-91)||(36745870-36745928)
chr5 (33-91)||(38040665-38040723)
chr5 (19-92)||(3752482-3752555)
chr5 (19-138)||(18942277-18942397)
chr5 (33-91)||(40143946-40144004)
[»] chr3 (20 HSPs)
chr3 (19-260)||(42907797-42908036)
chr3 (19-207)||(51537075-51537264)
chr3 (19-206)||(35054596-35054784)
chr3 (35-197)||(15100648-15100811)
chr3 (22-185)||(29727768-29727932)
chr3 (19-114)||(53351199-53351294)
chr3 (33-199)||(42217055-42217222)
chr3 (19-91)||(30465089-30465161)
chr3 (147-247)||(11509004-11509108)
chr3 (161-206)||(40918352-40918397)
chr3 (19-91)||(55258087-55258159)
chr3 (149-206)||(3046601-3046658)
chr3 (19-92)||(29025287-29025360)
chr3 (19-91)||(23241865-23241937)
chr3 (19-91)||(37599876-37599948)
chr3 (19-91)||(39850723-39850795)
chr3 (19-86)||(33634911-33634978)
chr3 (149-192)||(53351313-53351356)
chr3 (33-91)||(2849268-2849326)
chr3 (161-206)||(53724224-53724269)
[»] chr1 (29 HSPs)
chr1 (19-246)||(3014014-3014247)
chr1 (33-252)||(49241684-49241903)
chr1 (19-138)||(33690187-33690306)
chr1 (19-206)||(24638730-24638915)
chr1 (33-200)||(3794187-3794355)
chr1 (19-206)||(44410740-44410928)
chr1 (46-260)||(962323-962543)
chr1 (19-207)||(32364149-32364338)
chr1 (19-206)||(3252254-3252442)
chr1 (19-115)||(45774788-45774880)
chr1 (19-112)||(18032315-18032408)
chr1 (19-92)||(24984170-24984243)
chr1 (19-92)||(42866306-42866379)
chr1 (32-125)||(46545421-46545514)
chr1 (19-91)||(28234827-28234899)
chr1 (33-115)||(20726025-20726107)
chr1 (19-92)||(3355428-3355501)
chr1 (51-104)||(19554184-19554237)
chr1 (19-92)||(37034880-37034953)
chr1 (19-91)||(44257798-44257870)
chr1 (149-247)||(40960053-40960156)
chr1 (43-125)||(4225049-4225131)
chr1 (149-246)||(45774904-45775006)
chr1 (54-104)||(50358956-50359006)
chr1 (74-123)||(45484231-45484280)
chr1 (51-92)||(51727116-51727157)
chr1 (166-206)||(18032458-18032498)
chr1 (20-88)||(20117850-20117918)
chr1 (43-91)||(46535277-46535325)
[»] chr6 (7 HSPs)
chr6 (19-206)||(23595719-23595907)
chr6 (19-125)||(6817318-6817424)
chr6 (19-91)||(24068200-24068272)
chr6 (19-91)||(30269621-30269693)
chr6 (19-92)||(21289579-21289651)
chr6 (43-138)||(29419724-29419819)
chr6 (67-116)||(35166055-35166104)
[»] chr7 (20 HSPs)
chr7 (19-206)||(34191790-34191978)
chr7 (19-125)||(46170669-46170775)
chr7 (19-206)||(10992603-10992791)
chr7 (46-198)||(33610645-33610798)
chr7 (19-122)||(31813516-31813619)
chr7 (19-206)||(34259161-34259349)
chr7 (19-198)||(5418925-5419101)
chr7 (37-123)||(17833711-17833797)
chr7 (19-91)||(11734245-11734317)
chr7 (19-91)||(36099691-36099763)
chr7 (54-125)||(25069361-25069432)
chr7 (19-125)||(10198335-10198441)
chr7 (19-92)||(44605934-44606007)
chr7 (19-91)||(1582183-1582255)
chr7 (19-91)||(29983263-29983335)
chr7 (19-91)||(36858161-36858233)
chr7 (22-92)||(24096722-24096792)
chr7 (35-125)||(16216974-16217064)
chr7 (43-112)||(45498883-45498951)
chr7 (43-91)||(47423497-47423545)
[»] chr8 (18 HSPs)
chr8 (19-206)||(32493072-32493260)
chr8 (19-138)||(28761636-28761756)
chr8 (19-108)||(597262-597350)
chr8 (19-92)||(36833932-36834005)
chr8 (149-206)||(38712110-38712167)
chr8 (19-92)||(42063490-42063563)
chr8 (19-91)||(19726716-19726788)
chr8 (19-91)||(40485556-40485628)
chr8 (19-91)||(41726361-41726433)
chr8 (33-91)||(30360497-30360555)
chr8 (19-88)||(14910123-14910192)
chr8 (19-92)||(44056504-44056577)
chr8 (43-125)||(18656601-18656683)
chr8 (33-115)||(29867770-29867852)
chr8 (43-125)||(39375166-39375248)
chr8 (43-91)||(5970006-5970054)
chr8 (19-91)||(31008538-31008610)
chr8 (43-91)||(36658559-36658607)
[»] chr4 (17 HSPs)
chr4 (33-138)||(19916387-19916492)
chr4 (19-200)||(54822075-54822257)
chr4 (19-138)||(4414443-4414563)
chr4 (19-206)||(8132819-8133007)
chr4 (19-92)||(1936509-1936582)
chr4 (38-260)||(6354801-6355026)
chr4 (19-92)||(25232673-25232746)
chr4 (47-193)||(7362176-7362322)
chr4 (19-91)||(28359678-28359750)
chr4 (161-203)||(8132471-8132513)
chr4 (26-115)||(13428758-13428847)
chr4 (19-242)||(43245571-43245791)
chr4 (19-91)||(11792412-11792484)
chr4 (19-91)||(23611540-23611612)
chr4 (43-91)||(55497505-55497553)
chr4 (19-125)||(12704625-12704731)
chr4 (35-88)||(38519331-38519384)
[»] chr2 (23 HSPs)
chr2 (22-203)||(6065401-6065583)
chr2 (35-125)||(16106684-16106774)
chr2 (33-125)||(37484445-37484537)
chr2 (19-125)||(35305265-35305371)
chr2 (19-116)||(10810536-10810633)
chr2 (19-114)||(32878694-32878789)
chr2 (19-92)||(3988733-3988806)
chr2 (19-138)||(21800638-21800758)
chr2 (19-91)||(23293189-23293261)
chr2 (19-91)||(24128781-24128853)
chr2 (43-123)||(26606583-26606663)
chr2 (19-88)||(17513048-17513117)
chr2 (19-91)||(39678332-39678404)
chr2 (41-91)||(39061932-39061982)
chr2 (161-206)||(10810444-10810489)
chr2 (149-206)||(16457635-16457692)
chr2 (67-116)||(24934914-24934963)
chr2 (67-116)||(25683606-25683655)
chr2 (47-91)||(7153492-7153536)
chr2 (150-206)||(16106532-16106588)
chr2 (43-91)||(29523894-29523942)
chr2 (43-91)||(31900457-31900505)
chr2 (43-91)||(37314945-37314993)
[»] scaffold0242 (1 HSPs)
scaffold0242 (20-92)||(17854-17926)
[»] scaffold0116 (1 HSPs)
scaffold0116 (19-92)||(7867-7940)
[»] scaffold0070 (1 HSPs)
scaffold0070 (19-91)||(12749-12821)
[»] scaffold0712 (1 HSPs)
scaffold0712 (149-206)||(4815-4872)
[»] scaffold0709 (1 HSPs)
scaffold0709 (149-206)||(4835-4892)
[»] scaffold0231 (1 HSPs)
scaffold0231 (19-88)||(11039-11108)
[»] scaffold0131 (1 HSPs)
scaffold0131 (32-125)||(7842-7935)
[»] scaffold0036 (1 HSPs)
scaffold0036 (19-92)||(51937-52010)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 33112278 - 33112051
Alignment:
Q  22 tcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatg 121  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  33112278 tcggcaggggcactgagttattggattaatgatcgaactactgagtcattgattgaactgcatgactgaactggattaaaccgtataactcggttagatg 33112179  T
Q  122 actctgtttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaatatgcaatttgtata 221  Q
    |||||||||| |||||||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33112178 actctgtttaggattaactttttttaagtatttaactacattaaatcggattgaatcgatgactcgaccacttaaaaactaaaaatatgcaatttgtata 33112079  T
Q  222 ttaatacttgtataactatatttttttt 249  Q
    ||||||||||||||||||||||||||||    
T  33112078 ttaatacttgtataactatatttttttt 33112051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 13956958 - 13957141
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    |||||||||  || ||||||||| || ||||||| |||||| ||||||||| || ||||||||||||||||||| | ||||||||| |||||||| | ||    
T  13956958 gactcggcataggtactgggtcaatgagttaatggtcgaaccactgagtcactggttgaaccgcatgactgaaccggattaaaccgaataactcgataag 13957057  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaacta 202  Q
     |||||| || ||| | ||||        | ||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  13957058 ttgactcggtcttacgtttaa-ttttttgatgtatttaactagattaaatcggattgaaccgatgactcgatcacttaaaaacta 13957141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 6273156 - 6273262
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||||||| || | |||||| |||||||||| | || |||||| |||||||||||||    
T  6273156 gactcggcaggggcactgggttattgggttaatggtcgaaccactgagtcaatggtcgaaccgtatgactgaaccggatcaaaccgaataactcggttag 6273255  T
Q  119 atgactc 125  Q
    |||||||    
T  6273256 atgactc 6273262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 32383949 - 32383775
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctgt-tta 131  Q
    ||||||||| | |||||||||| |||| |||| ||||||| |||||||||||||||||| || ||||||||| |||||||||| ||||||| | || | |    
T  32383949 actgggtcactaggttaatgattgaaccactgtgtcattggttgaaccgcatgactgaattggattaaaccgaataactcggtaagatgacccggtctca 32383850  T
Q  132 agattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    |||||||        | ||||||||  | |||||||| ||||||||||||||||||  || ||||||||||||||    
T  32383849 agattaaatttttataggtatttaatcagattaaatcagattgaaccgatgactcggtcatttaaaaactaaaaa 32383775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 14352013 - 14351825
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||| ||||||| ||| ||| || ||||||| |||||| |||||||||||  ||||||||||||||||||  | ||||||||| ||||||||||||     
T  14352013 gactcggtaggggcattggatcagtgagttaatggtcgaaccactgagtcattagttgaaccgcatgactgaatcggattaaaccggataactcggttat 14351914  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||| | || ||||||||||        | ||||||||    ||||||| || ||||||| |||||||||||||||||||||| ||||    
T  14351913 atgacccggtcttaagattaaatttttataggtatttaatcttattaaatagggttgaaccaatgactcgaccacttaaaaacttaaaa 14351825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 6459735 - 6459923
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||| ||| ||||||||| || ||||||| |||||| |||| |||| || ||||||||||||||||||  | ||||||||  |||||||||| |     
T  6459735 gactcggcatgggtactgggtcaatgagttaatggtcgaaccactgggtcactggttgaaccgcatgactgaatcggattaaaccagataactcggtcat 6459834  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||| | || |||| |||||        | ||||||||| | |||| ||||||| |||||||||||||| ||| ||||||||||||||    
T  6459835 atgacccggtgttaatattaaatttttataggtatttaaccagattagatcggatcgaaccgatgactcggccatttaaaaactaaaaa 6459923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 35456543 - 35456640
Alignment:
Q  27 aggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgact 124  Q
    ||||| ||||| ||||||| | |||| |||||| ||||||||| || ||||||||||||||||||  | ||||||||| |||||||||||| ||||||    
T  35456543 aggggtactggttcattggatcaatggtcgaaccactgagtcactggttgaaccgcatgactgaatcggattaaaccggataactcggttaaatgact 35456640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 14635373 - 14635446
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| | |||||||||| | |||||||||||||||||    
T  14635373 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccagtgagtcattggtcgaaccgcatgactgaac 14635446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 8761169 - 8761097
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| | ||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  8761169 gactcggcgggggtactgggtcaataggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 8761097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 35758063 - 35758135
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| | || ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  35758063 gactcggcggaggtactgggtcagtgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 35758135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 36745928 - 36745870
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  36745928 actgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 36745870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 38040665 - 38040723
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  38040665 actgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 38040723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 3752482 - 3752555
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| ||||| |||| |||||  | |||||||||| | |||||||||||||||||    
T  3752482 gactcggcgggggtactgggtcaatgggtcaatggtcgaagcagtgagtcattggtcgaaccgcatgactgaac 3752555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 18942277 - 18942397
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||| ||||| || |||||| ||||| |||| |||||| ||||  | | || ||||||||||||||||||  | |||||| || ||||||| ||||     
T  18942277 gactcggtaggggtaccgggtcactgggtcaatggtcgaaccactggatgactggttgaaccgcatgactgaatcggattaaatcggataactcagttaa 18942376  T
Q  119 atgactctgt-ttaagattaa 138  Q
    ||||||| || ||||||||||    
T  18942377 atgactcggtcttaagattaa 18942397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 40143946 - 40144004
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||| |||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  40143946 actgagtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 40144004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 42907797 - 42908036
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||| | |||||||||||| ||||||||||    
T  42907797 gactcggcaggggcactgggtcattaggttaatggtcgaaccactgagtcattggttgaaccgcatgactgaaccggattaaaccgtattactcggttag 42907896  T
Q  119 atgactctgtttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaatatgcaatttgt 218  Q
    ||||||| | ||| |||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  42907897 atgactcggcttaggattaactttttttaagtatttaactagattaaatcggattgaaccgatgactcgaccacttaaaaa-ttaaaatatgtaatttgt 42907995  T
Q  219 atattaatacttgtataactatattttttttaaaagagtata 260  Q
    |||||||| |||||||||||||| |||||| |||||||||||    
T  42907996 atattaatgcttgtataactata-ttttttaaaaagagtata 42908036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 51537264 - 51537075
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| | ||||||| |||||||||| |||||| |||| |||| || |||||||||||| |||||  | ||||||||| |||||||||||||    
T  51537264 gactcggcaggggtattgggtcactgggttaatggtcgaaccactgggtcactggttgaaccgcatgtctgaatcggattaaaccggataactcggttag 51537165  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaat 207  Q
    ||||||| || ||||||||||        || |||||||| | ||||||||| ||||||||| |||||||  ||| | ||||||||||||    
T  51537164 atgactcggtcttaagattaaatttttataactatttaaccagattaaatcgaattgaaccggtgactcggtcacctcaaaactaaaaat 51537075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 35054784 - 35054596
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||| ||| ||||||||| || ||||||| |||||| | || |||| || ||||||||||||||||||| ||||||||||  |||||||| | ||    
T  35054784 gactcggcatgggtactgggtcagtgagttaatggtcgaaccattgggtcactggttgaaccgcatgactgaaccgaattaaaccaaataactcgataag 35054685  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
     |||||| || ||| ||||||        | ||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||    
T  35054684 ttgactcggtcttacgattaaatttttatatgtatttaactagattaaattggattgaaccgatgacccggccacttaaaaactaaaaa 35054596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 15100648 - 15100811
Alignment:
Q  35 tgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctg-tttaag 133  Q
    |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||  | ||||||||| ||||||||| || ||||||| | ||||||    
T  15100648 tgggtcattgggttaatggtcgaaccactgagtcactgattgaaccgcatgactgaatcggattaaaccgaataactcggctaaatgactcggttttaag 15100747  T
Q  134 attaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaa 197  Q
    |||||        | ||| |||||   |||||||||||||||||| ||||||||  ||||||||    
T  15100748 attaaatctttataggtaattaacccgattaaatcggattgaaccaatgactcggtcacttaaa 15100811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 29727768 - 29727932
Alignment:
Q  22 tcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatg 121  Q
    |||||||||| | |||||||||||||||||| | |||| ||||||||| |  ||||||||||||||||||  | ||||||||| ||||||| ||||||||    
T  29727768 tcggcaggggtattgggtcattgggttaatggttgaaccactgagtcactagttgaaccgcatgactgaatcggattaaaccggataactcagttagatg 29727867  T
Q  122 actctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgact 185  Q
    |||| || ||||||||||        |  |||||||||| ||||||||| ||||||||| |||||    
T  29727868 actcggtcttaagattaaatttttatagctatttaactagattaaatcgaattgaaccggtgact 29727932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 53351199 - 53351294
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcgg 114  Q
    ||||||||||||| ||||||||||| |||||||| | |||| |||||||| ||| ||||||||||||||||||| | ||||||||| |||||||||    
T  53351199 gactcggcaggggtactgggtcattaggttaatggttgaaccactgagtcgttggttgaaccgcatgactgaaccggattaaaccggataactcgg 53351294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 42217222 - 42217055
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctg-ttta 131  Q
    |||||||||||| ||||||| |||||| ||||||||| || ||||||||||||||||||  | ||||||||| ||||||||| |||||||||| | ||||    
T  42217222 actgggtcattgagttaatggtcgaaccactgagtcactggttgaaccgcatgactgaatcggattaaaccgaataactcggctagatgactcggtttta 42217123  T
Q  132 agattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaa 199  Q
    ||||| |        | ||| |||||   |||||||||||||||||| ||||||||  ||||||||||    
T  42217122 agatttaatatttataggtaattaacccgattaaatcggattgaaccaatgactcggtcacttaaaaa 42217055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 30465161 - 30465089
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  30465161 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 30465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 11509004 - 11509108
Alignment:
Q  147 aagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaa-----atatgcaatttgtatattaatacttgtataactata 241  Q
    |||| |||||||  ||||||||||||||||| |||||||||  ||||||||||||||||     | ||  ||| |||||||||||| |||||||||||||    
T  11509004 aagtgtttaacttgattaaatcggattgaac-gatgactcggtcacttaaaaactaaaaaattgacatataatatgtatattaatatttgtataactata 11509102  T
Q  242 tttttt 247  Q
    ||||||    
T  11509103 tttttt 11509108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 40918352 - 40918397
Alignment:
Q  161 attaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||    
T  40918352 attaaatcggattgaaccgatgactcgatcacttaaaatctaaaaa 40918397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 55258159 - 55258087
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||  |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  55258159 gactcggtgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 55258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 3046601 - 3046658
Alignment:
Q  149 gtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||||||||| ||||||||  ||||||||||||| ||| ||||||||||| ||||||    
T  3046601 gtatttaactagattaaatcaaattgaaccgatgattcggccacttaaaaattaaaaa 3046658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 29025287 - 29025360
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| ||||| |||| | |||| | |||||||||| | |||||||||||||||||    
T  29025287 gactcggcgggggtactgggtcaatgggtcaatggttgaaccagtgagtcattggtcgaaccgcatgactgaac 29025360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 23241937 - 23241865
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| | ||||||| ||||| |||| |||||| ||||| |||||| | ||||||||||||||||    
T  23241937 gactcggcgggggtattgggtcaatgggtcaatggtcgaaccactgaatcattggtcgaaccgcatgactgaa 23241865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 37599948 - 37599876
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||| ||| |||| ||||||||| ||| | |||| |||||| |||||||||||| | ||||||||||||||||    
T  37599948 gacttggcgggggtactgggtcaatggatcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 37599876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 39850723 - 39850795
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||| ||||| ||||| |||| |||||| |||||||||||| | ||||||||||| ||||    
T  39850723 gactcggcgggggtactaggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgattgaa 39850795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 33634911 - 33634978
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatga 86  Q
    |||||||| |||| ||||||| | ||||| |||| |||||| |||||||||||| | |||||||||||    
T  33634911 gactcggcgggggtactgggttaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatga 33634978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 53351313 - 53351356
Alignment:
Q  149 gtatttaactacattaaatcggattgaaccgatgactcgaccac 192  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||    
T  53351313 gtatttagctagattaaatcggattgaatcgatgactcgaccac 53351356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 2849326 - 2849268
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||||||| |||||||||| |||||  | |||||||||| | ||||||||||||||||    
T  2849326 actgggtcaatgggttaatggtcgaatcattgagtcattggtcgaaccgcatgactgaa 2849268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 53724224 - 53724269
Alignment:
Q  161 attaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    |||||||| ||||||||||| ||||| |||||||||||| ||||||    
T  53724224 attaaatcagattgaaccgacgactctaccacttaaaaattaaaaa 53724269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 3014247 - 3014014
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| ||||||||| ||| |||||| |||||| |||||||||||| ||||||| ||||||||||| | ||||||||| ||||||||||||     
T  3014247 gactcggcaggggtactgggtcactggattaatggtcgaaccactgagtcattggttgaaccacatgactgaaccggattaaaccgaataactcggttaa 3014148  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaa-----atatgca 212  Q
    ||||| | || ||||||||||        | ||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||     | ||  |    
T  3014147 atgacccggtcttaagattaaatttttataggtatttaactatattaaatcggattgaacccgtgactcgactacttaaaaactaaaaaactgacatata 3014048  T
Q  213 atttgtatattaatacttgtataactatattttt 246  Q
    || |||||||||||| ||||||||||||||||||    
T  3014047 atatgtatattaatatttgtataactatattttt 3014014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 49241684 - 49241903
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctgtttaa 132  Q
    ||||| |||||||||||||| |||||| || ||||| ||| |||||||||||| ||||||   ||||||||  |||||||||||||| ||||| | |||     
T  49241684 actggatcattgggttaatggtcgaaccaccgagtcgttggttgaaccgcatggctgaacctgattaaaccaaataactcggttagacgactcggcttag 49241783  T
Q  133 gattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaatatgcaatttgtatattaatacttgt 232  Q
    |||| |        | ||||||| ||| |||||||||||||||| | ||||||| | |||||||||||||||||| || |||||||||||||||||||||    
T  49241784 gattcattttttttaggtatttagctagattaaatcggattgaatcaatgactcaagcacttaaaaactaaaaatttgtaatttgtatattaatacttgt 49241883  T
Q  233 ataactatattttttttaaa 252  Q
    || ||| | |||||| ||||    
T  49241884 atgacttttttttttataaa 49241903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 33690187 - 33690306
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||| ||| ||||||||||||| ||||  | ||||||||| |||||||||||||    
T  33690187 gactcggcaggggtactgggtcattgggttaatggtcgaaccactgagtcgttggttgaaccgcatgattgaatcggattaaaccgaataactcggttag 33690286  T
Q  119 atgactctgtttaagattaa 138  Q
    ||||||| | ||| ||||||    
T  33690287 atgactcggcttaggattaa 33690306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 24638730 - 24638915
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||| ||| | ||||||| || ||||||| |||||||   | |||| || ||||||||||||||||||||| ||||||||| |||||||||| ||    
T  24638730 gactcggcatgggtagtgggtcagtgagttaatggtcgaact---gggtcactggttgaaccgcatgactgaactggattaaaccgaataactcggtaag 24638826  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
     |||||| || ||| ||||||        | ||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  24638827 ttgactcggtcttacgattaaatttttatatgtatttaactagattaaataggattgaaccgatgactcggccacttaaaaactaaaaa 24638915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 3794187 - 3794355
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctgt-tta 131  Q
    |||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||    |||||| | |||||||||||||||||| |  | |||    
T  3794187 actgggtcattgggttaatggtcgaaccactgagtcattggttgaaccgcatgactgaaccagtttaaactgaataactcggttagatgacccgatctta 3794286  T
Q  132 agattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaac 200  Q
    |||||||        | ||||||||  | ||||||||||||||||| ||||||||||| ||||||||||    
T  3794287 agattaaatttttataggtatttaatcatattaaatcggattgaactgatgactcgactacttaaaaac 3794355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 44410740 - 44410928
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||| ||| ||||||||| |||||||||| |||||| ||||||||| || ||||||||||||||| ||    ||||||||| ||||||||| |||    
T  44410740 gactcggcaagggtactgggtcactgggttaatggtcgaaccactgagtcactggttgaaccgcatgactaaatcagattaaaccgaataactcggctag 44410839  T
Q  119 atgactctg-tttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||||| | |||||||||||        | ||| |||||   |||||||||||||||||| |||||||| |||||||||||| |||||    
T  44410840 atgactcggttttaagattaaatctttataggtaattaacccgattaaatcggattgaaccaatgactcggccacttaaaaacaaaaaa 44410928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 260
Target Start/End: Complemental strand, 962543 - 962323
Alignment:
Q  46 gttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctgt-ttaagattaacnnnnn 144  Q
    ||||||| |||||| ||||||||| || ||||||| ||||||||||| | ||||||||| |||||||||| || |||||  || ||| | ||||          
T  962543 gttaatggtcgaaccactgagtcactggttgaaccacatgactgaaccggattaaaccgaataactcggtaagttgacttggtcttacgtttaatttttg 962444  T
Q  145 nnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaat----atgcaatttgtatattaatacttgtataactat 240  Q
      | ||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||     ||| ||| |||||||||||| || |||| ||||    
T  962443 tgatgtatttaactagattaaatcggattgaaccgatgactcggtcacttaaaaactaaaaaataacatgtaatatgtatattaatagttatatatctat 962344  T
Q  241 at-tttttttaaaagagtata 260  Q
    || ||||||| ||||||||||    
T  962343 atattttttttaaagagtata 962323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 32364149 - 32364338
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    |||||| |||||| | ||||||  |||||||||| |||||| |||| |||| || ||||||||||||||||||  | ||||||||| |||||||||||||    
T  32364149 gactcgacaggggtattgggtcgctgggttaatggtcgaaccactgggtcactggttgaaccgcatgactgaatcggattaaaccggataactcggttag 32364248  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaat 207  Q
    ||||||| || ||||||||||        || |||||||| | ||||||||| ||| ||||| |||||||  ||| | ||||||||||||    
T  32364249 atgactcggtcttaagattaaatttttataactatttaaccaaattaaatcgaatttaaccggtgactcggtcacctcaaaactaaaaat 32364338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 3252254 - 3252442
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||| || || ||||||||| || ||||||| | |||| ||||||||| || ||||||||||||||||||| | ||||||||| ||||||||| |||    
T  3252254 gactcggtagaggtactgggtcactgagttaatggttgaaccactgagtcactggttgaaccgcatgactgaaccggattaaaccggataactcggctag 3252353  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
     |||||| ||  || ||||||        |  |||||| | | ||||||||| |||||||| |||||||| ||||||||||| ||||||    
T  3252354 ttgactcggtaataggattaaatttttttagatatttatccatattaaatcgaattgaaccaatgactcggccacttaaaaattaaaaa 3252442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 45774788 - 45774880
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggt 115  Q
    ||||||||||| | ||||| ||||||||||||||||||| |    |||||||||||||| |||||||||||||| | ||||||||| ||||||||||    
T  45774788 gactcggcaggtgtactggatcattgggttaatgatcgacc----gagtcattgattgagccgcatgactgaaccggattaaaccgaataactcggt 45774880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 18032315 - 18032408
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactc 112  Q
    ||||||||| ||| ||||| ||| || ||||||| |||||| ||||||||| || |||||| ||||||||||| || ||||||||| |||||||    
T  18032315 gactcggcatgggtactggatcaatgagttaatggtcgaaccactgagtcactggttgaactgcatgactgaattggattaaaccggataactc 18032408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 24984243 - 24984170
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| ||||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  24984243 gactcggcgggggtactgggtcaatgggtcaatggtcgaactagtgagtcattggtcgaaccgcatgactgaac 24984170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 42866306 - 42866379
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | |||||||||||||||||    
T  42866306 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaac 42866379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 46545421 - 46545514
Alignment:
Q  32 cactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    |||||||||| || || | || |||||| |||||||||||| ||||||||||||||||||| | |||||| || |||||||||||  |||||||    
T  46545421 cactgggtcaatgagtcattggtcgaaccactgagtcattggttgaaccgcatgactgaaccgtattaaatcggataactcggttgtatgactc 46545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 28234827 - 28234899
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  28234827 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 28234899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 20726025 - 20726107
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggt 115  Q
    ||||||||| || ||||||| |||||| ||||| ||| || |||||| |||||||||||  | |||||||||||| |||||||    
T  20726025 actgggtcaatgagttaatggtcgaaccactgactcactggttgaactgcatgactgaatcggattaaaccgtatgactcggt 20726107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 3355428 - 3355501
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||  ||||||||| ||||| |||| |||||  |||||||||||| | |||||||||||||||||    
T  3355428 gactcggcggggatactgggtcaatgggtcaatggtcgaatcactgagtcattggtcgaaccgcatgactgaac 3355501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 19554237 - 19554184
Alignment:
Q  51 tgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccg 104  Q
    ||||||||| ||||| |||||| | |||||| ||||||||||||||||||||||    
T  19554237 tgatcgaaccactgaatcattggtcgaaccgtatgactgaactgaattaaaccg 19554184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 37034953 - 37034880
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    ||||||||| ||| ||||||| | ||||| |||| |||||| |||| ||||||| | |||||||||||||||||    
T  37034953 gactcggcatgggtactgggttactgggtcaatggtcgaaccactgggtcattggtcgaaccgcatgactgaac 37034880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 44257798 - 44257870
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| || || |||| |||||| || ||||||||| | ||||||||||||||||    
T  44257798 gactcggcgggggtactgggtcaatgagtcaatggtcgaaccaccgagtcattggtcgaaccgcatgactgaa 44257870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 40960156 - 40960053
Alignment:
Q  149 gtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa-----tatgcaatttgtatattaatacttgtataactatatt 243  Q
    ||||||||| |  ||| |||||||||||||||||||| ||  ||||||||||||||||      ||| ||  |||||||||||| ||||||| |||||||    
T  40960156 gtatttaaccaggttagatcggattgaaccgatgacttgattacttaaaaactaaaaaaatggcatgtaacatgtatattaatatttgtatagctatatt 40960057  T
Q  244 tttt 247  Q
    ||||    
T  40960056 tttt 40960053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 4225131 - 4225049
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    ||||| |||| |||||| |||||||||||| ||||||||||| ||||||| | || ||  || || |||||||||||| ||||    
T  4225131 tgggtcaatggtcgaaccactgagtcattggttgaaccgcataactgaaccggatcaactcggatgactcggttagataactc 4225049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 45774904 - 45775006
Alignment:
Q  149 gtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaa-----aatatgcaatttgtatattaatacttgtataactatatt 243  Q
    ||||||||| | ||||||||||||||||||| ||||||    ||||||||||||||     || ||  ||| |||||||||||| || ||||||||||||    
T  45774904 gtatttaaccatattaaatcggattgaaccggtgactcagttacttaaaaactaaaaaactaacatataatgtgtatattaatatttttataactatatt 45775003  T
Q  244 ttt 246  Q
    |||    
T  45775004 ttt 45775006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 50359006 - 50358956
Alignment:
Q  54 tcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccg 104  Q
    |||||| ||||| |||||| | |||||||||||||||| ||||||||||||    
T  50359006 tcgaaccactgaatcattggtcgaaccgcatgactgaattgaattaaaccg 50358956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 45484231 - 45484280
Alignment:
Q  74 ttgaaccgcatgactgaactgaattaaaccgtataactcggttagatgac 123  Q
    ||||||||||||||||||  | ||||||||| ||||||||||||| ||||    
T  45484231 ttgaaccgcatgactgaatcggattaaaccggataactcggttaggtgac 45484280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 51727116 - 51727157
Alignment:
Q  51 tgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    ||||||||| | |||||||||| |||||||||||||||||||    
T  51727116 tgatcgaaccattgagtcattggttgaaccgcatgactgaac 51727157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 18032458 - 18032498
Alignment:
Q  166 atcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||||| |||||||||||||| ||| ||||||||||||||    
T  18032458 atcggatcgaaccgatgactcggccatttaaaaactaaaaa 18032498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 20117918 - 20117850
Alignment:
Q  20 actcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgact 88  Q
    |||||| ||||  |||| |||||||||| |||| |||||| | ||||| |||| |||||||||||||||    
T  20117918 actcggtagggatactgagtcattgggtcaatggtcgaaccattgagttattggttgaaccgcatgact 20117850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 46535325 - 46535277
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  46535325 tgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 46535277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 23595719 - 23595907
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| ||||||||| |||||| ||| |||||| |||||||||||| ||||||||||||| | ||  | ||||||||  ||||||||| |||    
T  23595719 gactcggcaggggtactgggtcactgggttgatggtcgaaccactgagtcattggttgaaccgcatgattaaatcggattaaaccaaataactcggctag 23595818  T
Q  119 atgactctg-tttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||| | | |||||||||||        ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||    
T  23595819 atgacccggttttaagattaattttttataagtatttaactagattaaatcggattgaaccgatgactcggccacttaaaaacaaaaaa 23595907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 6817318 - 6817424
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||| | ||| |||||||||||||||||||| |||||| ||||||||| || ||||||||||| ||| ||  | ||||||||| |||| |||| |||    
T  6817318 gactcggtaagggtactgggtcattgggttaatggtcgaaccactgagtcactggttgaaccgcataactaaatcggattaaaccgaataattcggctag 6817417  T
Q  119 atgactc 125  Q
    |||||||    
T  6817418 atgactc 6817424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 24068272 - 24068200
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| | ||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  24068272 gactcggcgggggtattgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 24068200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 30269621 - 30269693
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| || ||||||| |||||| |||||||| ||| | ||||||||||||||||    
T  30269621 gactcggcgggggtactgggtcaatgagttaatggtcgaaccactgagtcgttggtcgaaccgcatgactgaa 30269693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 21289579 - 21289651
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| | |||||||||| | |||||||||||||||||    
T  21289579 gactcggc-ggggtactgggtcaatgggtcaatggtcgaaccagtgagtcattggtcgaaccgcatgactgaac 21289651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 29419819 - 29419724
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctgt-ttaagattaa 138  Q
    ||||| |||| || ||| ||||||||| || ||||||||||||||||||  | |||||| || ||||||||||||| |||||| || ||||||||||    
T  29419819 tgggtcaatggtcaaaccactgagtcactggttgaaccgcatgactgaatcggattaaa-cggataactcggttaggtgactcggtcttaagattaa 29419724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 35166104 - 35166055
Alignment:
Q  67 tcattgattgaaccgcatgactgaactgaattaaaccgtataactcggtt 116  Q
    |||||| ||||||||||| ||||||||| |||||| || |||||||||||    
T  35166104 tcattggttgaaccgcataactgaactgtattaaatcggataactcggtt 35166055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 34191978 - 34191790
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||| ||||||| ||||| ||| |||||| ||| |||||| |||||||||||| ||||||||||||||| ||  | ||||||||  ||||||||| |||    
T  34191978 gactctgcaggggtactggatcactgggttgatggtcgaaccactgagtcattggttgaaccgcatgactaaatcggattaaaccaaataactcggctag 34191879  T
Q  119 atgactctgttt-aagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||| | |||| ||||||||        ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||    
T  34191878 atgacccggttttaagattaattttttataagtatttaactagattaaatcggattgaaccgatgactcggccacttaaaaacaaaaaa 34191790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 46170669 - 46170775
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||||||| || | ||||||||||| ||||| | || |||||| |||||||||||||    
T  46170669 gactcggcagggacactgggtcattgggttaatggtcgaaccactgagtcaatggtcgaaccgcatgaatgaaccggatcaaaccgaataactcggttag 46170768  T
Q  119 atgactc 125  Q
    |||||||    
T  46170769 atgactc 46170775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 10992791 - 10992603
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| ||||||||| || ||||||| |||||| ||| ||||| || |||||| |||||||||||  | ||||||||| |||||||||| |     
T  10992791 gactcggcaggggtactgggtcaatgagttaatggtcgaaccactaagtcactggttgaactgcatgactgaatcggattaaaccggataactcggtcat 10992692  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||| | || |||| |||||        | ||||||||| | |||| ||||||| |||||||||||||| ||| ||||||||||||||    
T  10992691 atgacccggtgttaatattaaatttttataggtatttaaccagattagatcggatcgaaccgatgactcggccatttaaaaactaaaaa 10992603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 33610645 - 33610798
Alignment:
Q  46 gttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc-tgtttaagattaacnnnnn 144  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||||    ||||||||  |||||||||||||||||||| | |||||||||||          
T  33610645 gttaatggtcgaaccactgagtcattggttgaaccgcatgactgaatcagattaaaccaaataactcggttagatgactcgtttttaagattaaattttt 33610744  T
Q  145 nnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaa 198  Q
      ||||| |||||   |||||||| |||| |||||||||| |||||||||||||    
T  33610745 ataagtaattaacccgattaaatcagattaaaccgatgacccgaccacttaaaa 33610798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 31813516 - 31813619
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| ||||| ||| |||||||||| |||||| ||||||||| || |||||  |||||| ||||  ||||||||||| |||||||||||||    
T  31813516 gactcggcaggggtactggttcaatgggttaatggtcgaaccactgagtcagtggttgaattgcatgattgaatcgaattaaaccgaataactcggttag 31813615  T
Q  119 atga 122  Q
    ||||    
T  31813616 atga 31813619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 34259349 - 34259161
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||| ||| | | ||||| || ||||||| |||||| ||||||||| || ||||||||||||||||||  |||||||| || |||||||||| |     
T  34259349 gactcggcatgggtattaggtcaatgagttaatggtcgaaccactgagtcactggttgaaccgcatgactgaatcgaattaaatcggataactcggtcat 34259250  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||| | || |||| |||||        | ||||||||| | |||| ||||||| |||||||||||||| ||| ||||||||||||||    
T  34259249 atgacccagtgttaatattaaatttttataggtatttaaccagattagatcggatcgaaccgatgactcggccatttaaaaactaaaaa 34259161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 5418925 - 5419101
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    |||||||||| || ||||||| | |||||||||| |||||| ||||||||| || ||||||||    ||||||  | ||||||||| |||||||||||      
T  5418925 gactcggcagaggtactgggttaatgggttaatggtcgaaccactgagtcactggttgaaccg----actgaatcggattaaaccgaataactcggttgt 5419020  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaa 198  Q
    ||||| |||| ||||||||||        | ||||||||| | |||| || ||||||||||||||||||| ||| ||||||    
T  5419021 atgaccctgtcttaagattaaatttttataggtatttaaccagattagattggattgaaccgatgactcggccatttaaaa 5419101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 17833711 - 17833797
Alignment:
Q  37 ggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgac 123  Q
    ||||||| ||||||||||||||| |||||||| ||| |||| ||||||||||||||   | ||||||| |||||||||| |||||||    
T  17833711 ggtcattaggttaatgatcgaaccactgagtcgttggttgagccgcatgactgaaccagactaaaccggataactcggtaagatgac 17833797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 11734317 - 11734245
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  11734317 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 11734245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 36099763 - 36099691
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  36099763 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 36099691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 25069361 - 25069432
Alignment:
Q  54 tcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    |||||| |||||||||||| ||||||||||||||||||| | |||||| || |||||||||||  |||||||    
T  25069361 tcgaaccactgagtcattggttgaaccgcatgactgaaccgtattaaatcggataactcggttgtatgactc 25069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 10198335 - 10198441
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| | ||| ||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||| | || ||  || || ||||||||||    
T  10198335 gactcggcaggggtattggatcactgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcggttag 10198434  T
Q  119 atgactc 125  Q
    || ||||    
T  10198435 ataactc 10198441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 44606007 - 44605934
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| ||||| |||| | |||| |||||||||||| | |||||||||||||||||    
T  44606007 gactcggccggggtactgggtcaatgggtcaatggttgaaccactgagtcattggtcgaaccgcatgactgaac 44605934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 1582183 - 1582255
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| ||||| ||||||||||| || || |||| ||||||   |||||||||||||||||||||||||||||    
T  1582183 gactcagcaggtgcactgggtcaatgagtcaatggtcgaaccgttgagtcattgattgaaccgcatgactgaa 1582255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 29983263 - 29983335
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||  |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  29983263 gactcggtgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 29983335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 36858161 - 36858233
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||  ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  36858161 gactcggcggggatactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 36858233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 24096792 - 24096722
Alignment:
Q  22 tcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||||| ||||||||| ||| | |||| |||||| |||||||||||| | |||||||||| ||||||    
T  24096792 tcggcaggggtactgggtcactggatcaatggtcgaaccactgagtcattggtcgaaccgcatgtctgaac 24096722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 16217064 - 16216974
Alignment:
Q  35 tgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    ||||||| ||||| |||| |||||| |||||||||||| | ||||| ||||||||||| | || ||  || || |||||||||||| ||||    
T  16217064 tgggtcactgggtcaatggtcgaaccactgagtcattggtcgaaccacatgactgaaccggatcaactcggatgactcggttagataactc 16216974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 45498883 - 45498951
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactc 112  Q
    ||||| |||| |||||| | |||||||||||| |||||| |||||||||| | ||||||||| |||||||    
T  45498883 tgggtcaatggtcgaaccattgagtcattgatcgaaccgaatgactgaaccg-attaaaccggataactc 45498951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 47423497 - 47423545
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  47423497 tgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 47423545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 32493260 - 32493072
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||| ||| | ||||||| || ||||||| |||||| ||||  |||||| ||||||||||||||||||| ||||||||||| |||||| ||| ||    
T  32493260 gactcggcatgggtattgggtcagtgagttaatggtcgaaccactggatcattggttgaaccgcatgactgaaccgaattaaaccgaataacttggtaag 32493161  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
     | |||| || ||| ||||||          ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||    
T  32493160 ttcactcggtcttacgattaaatttttatgtgtatttaactagattaaatcggattgaacccatgactcggccacttaaaaactaaaaa 32493072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 28761756 - 28761636
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| ||||||| ||||||| |||| |||||| ||||||||| || ||||||||||||||||||  | ||||||||| |||||||||||||    
T  28761756 gactcggcaggggtactgggttattgggtcaatggtcgaaccactgagtcactggttgaaccgcatgactgaatcggattaaaccggataactcggttag 28761657  T
Q  119 atgactctgt-ttaagattaa 138  Q
     |||||| || ||||||||||    
T  28761656 gtgactcggtcttaagattaa 28761636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 597262 - 597350
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtata 108  Q
    ||||||| ||||||||||| |||||| ||||||| |||||| |||||||||||| ||||||||| ||||||||| | |||||||||||||    
T  597262 gactcggtaggggcactggatcattgagttaatggtcgaaccactgagtcattg-ttgaaccgcgtgactgaaccggattaaaccgtata 597350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 36833932 - 36834005
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    ||||||||||||| ||||||||||||||| |||| |||||| ||||| |||||||| |||||||||||||||||    
T  36833932 gactcggcaggggtactgggtcattgggtcaatggtcgaaccactgaatcattgatcgaaccgcatgactgaac 36834005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 38712167 - 38712110
Alignment:
Q  149 gtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  38712167 gtatttaactagattaaatcggattgaaccgatgactcggccacttaaaaactaaaaa 38712110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 42063490 - 42063563
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | |||||||||||||||||    
T  42063490 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaac 42063563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 19726788 - 19726716
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  19726788 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 19726716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 40485628 - 40485556
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  40485628 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 40485556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 41726433 - 41726361
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| | || ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  41726433 gactcggcggaggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 41726361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 30360497 - 30360555
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  30360497 actgggtcaatgggtcaatggtcgaaccactgagtcattgttcgaaccgcatgactgaa 30360555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 14910123 - 14910192
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgact 88  Q
    |||||||| || | ||||| ||| ||||| ||||||||||| |||||||||||| | |||||||||||||    
T  14910123 gactcggcgggagtactggatcaatgggtcaatgatcgaaccactgagtcattggtcgaaccgcatgact 14910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 44056577 - 44056504
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    ||||||||||||| ||||  ||| ||||| |||| |||||| |||||||||||| | |||||| ||||||||||    
T  44056577 gactcggcaggggtactgaatcactgggtcaatggtcgaaccactgagtcattggtcgaaccgtatgactgaac 44056504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 18656683 - 18656601
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    ||||| |||| |||||| |||||||||||| | ||||||||||||||||| | || ||  || || |||||||||||| ||||    
T  18656683 tgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcggttagataactc 18656601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 29867770 - 29867852
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggt 115  Q
    ||||||||||||||| | || | |||| | ||||||| || ||||||||||||||||||| | |||||| || || |||||||    
T  29867770 actgggtcattgggtcattggttgaaccagtgagtcactggttgaaccgcatgactgaaccggattaaatcggatgactcggt 29867852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 39375166 - 39375248
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    ||||| |||| |||||| |||||||||||| | ||||||||||||||||| | || ||  || || |||||||||||| ||||    
T  39375166 tgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcggttagataactc 39375248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 5970054 - 5970006
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| |||| |||||| | |||||||||| ||||||||||||||||||    
T  5970054 tgggtcaatggtcgaaccattgagtcattggttgaaccgcatgactgaa 5970006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 31008610 - 31008538
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| |||| |||| ||||| |||| |||||| | |||||||||| | ||||||||||| ||||    
T  31008610 gactcggcgggggtactgagtcaatgggtcaatggtcgaaccagtgagtcattggtcgaaccgcatgattgaa 31008538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 36658559 - 36658607
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  36658559 tgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 36658607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 19916492 - 19916387
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctgtttaa 132  Q
    ||||||||||||| |||||| |||||| ||||| || ||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||     
T  19916492 actgggtcattggattaatggtcgaaccactgaatcgttggttgaaccgcatgactgaactgaattaaactgaataactcggttagatgactcggcttag 19916393  T
Q  133 gattaa 138  Q
    ||||||    
T  19916392 gattaa 19916387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 54822075 - 54822257
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||| | ||||||||| || || ||||||||||| ||||||||| || ||||||||||||||||||    |||||| || ||||||||| |||    
T  54822075 gactcggcaggtgtactgggtcactgagtcaatgatcgaaccactgagtcactggttgaaccgcatgactgaaacagattaaatcggataactcgggtag 54822174  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaac 200  Q
    |  |||| || ||||| ||||        ||||||||||||| ||||||||  |||||| |||||||||||| ||||||||||    
T  54822175 aacactcggtcttaaggttaaatttgtataagtatttaactatattaaatcatattgaatcgatgactcgacaacttaaaaac 54822257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 4414443 - 4414563
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| ||||||||| ||||| |||| |||||| ||||||||| |  ||||||||||||||||||  | ||||||||| |||||||| |||     
T  4414443 gactcggcaggggtactgggtcactgggtcaatggtcgaaccactgagtcacttgttgaaccgcatgactgaatcggattaaaccggataactcgattaa 4414542  T
Q  119 atgactctgt-ttaagattaa 138  Q
    ||||||| || ||||||||||    
T  4414543 atgactcggtcttaagattaa 4414563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 8132819 - 8133007
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||| || || ||||||||| || ||||||| | |||| |||||||||||| ||||||||||||||||||| | ||||||||| ||||||||| |||    
T  8132819 gactcggtagaggtactgggtcactgagttaatggttgaaccactgagtcattggttgaaccgcatgactgaaccggattaaaccggataactcggctag 8132918  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
     |||||| ||  || ||||||        |  |||||| | | ||||||||| |||||||| |||||||| ||||||||||| ||||||    
T  8132919 ttgactcggtaataggattaaatttttatagatatttatccatattaaatcgaattgaaccaatgactcggccacttaaaaattaaaaa 8133007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 1936582 - 1936509
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    ||||||||||||| ||||||||| ||||| |||| |||||| |||||||||||| | |||||||||||||||||    
T  1936582 gactcggcaggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaac 1936509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 260
Target Start/End: Complemental strand, 6355026 - 6354801
Alignment:
Q  38 gtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctg-tttaagatt 136  Q
    |||| |||||||||| |||||| | ||||||| |  ||||||||||||||||||| | ||||||||| ||||| |||||||||||||| |  ||||||||    
T  6355026 gtcactgggttaatggtcgaaccattgagtcaatagttgaaccgcatgactgaaccggattaaaccgaataacccggttagatgactcagccttaagatt 6354927  T
Q  137 aacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaatatgcaattt--gtatattaatacttgtat 234  Q
    |         | ||||| ||||| |||| ||||||||||| | |||||||    | ||||||||||||||  ||  || |   |||||||||| ||||||    
T  6354926 acattcttataggtattgaactagattagatcggattgaatcaatgactcagatatttaaaaactaaaaaactgacatgtaattatattaatatttgtat 6354827  T
Q  235 aactatattttttttaaaagagtata 260  Q
    |||||||| |||||| ||||||||||    
T  6354826 aactatatatttttttaaagagtata 6354801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 25232746 - 25232673
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    ||||||||||||| ||||||||| ||||| |||| |||||| |||||||||||| | |||||||||||||||||    
T  25232746 gactcggcaggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaac 25232673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 7362176 - 7362322
Alignment:
Q  47 ttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactctgtttaagattaacnnnnnnn 146  Q
    |||||| |||||| ||| | |||||| ||||||||||||| ||||||  ||||||||| |||||||| |||||||| ||    |||||||||            
T  7362176 ttaatggtcgaaccactaaatcattggttgaaccgcatgattgaactagattaaaccgaataactcgattagatgattcgacataagattaaatttcaat 7362275  T
Q  147 aagtatttaactacattaaatcggattgaaccgatgactcgaccact 193  Q
    |  |||||||| | ||||||||||||||||||||||||||| |||||    
T  7362276 agatatttaaccagattaaatcggattgaaccgatgactcggccact 7362322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 28359750 - 28359678
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||||| || | ||||||| ||||| ||||||||||| | ||  |||||||||||||||||||||||||    
T  28359750 gactcggcagaggtattgggtcactgggtcaatgatcgaaccattggatcattgattgaaccgcatgactgaa 28359678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 8132471 - 8132513
Alignment:
Q  161 attaaatcggattgaaccgatgactcgaccacttaaaaactaa 203  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  8132471 attaaatcggattgaaccgatgattcggccacttaaaaactaa 8132513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 13428847 - 13428758
Alignment:
Q  26 caggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggt 115  Q
    |||||| |||| |||  |||||||||| |||||| ||||||||| | |||||||||||| ||||||| |||| ||| |  ||||||||||    
T  13428847 caggggtactgcgtcgctgggttaatggtcgaaccactgagtcactaattgaaccgcataactgaaccgaatcaaaacaaataactcggt 13428758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 43245791 - 43245571
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    |||||| |||||| | ||||||| |||||||||| |||||| | ||||| | || ||||||||||| ||||||| | || ||| |  |||||||||| |     
T  43245791 gactcgacaggggtattgggtcactgggttaatggtcgaaccattgagttactggttgaaccgcataactgaaccggatcaaatcaaataactcggtcat 43245692  T
Q  119 atgactctgt-ttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaatatgcaatttg 217  Q
    ||||||| || |||| |||||          ||||||||| | |||||||   |||||||  ||||||| | |||||||||||||||   ||||||| ||    
T  43245691 atgactcggtcttaatattaaattgttattggtatttaaccaaattaaatttaattgaactaatgactc-atcacttaaaaactaaa---atgcaatatg 43245596  T
Q  218 tatattaatacttgtataactatat 242  Q
    |||||||||| ||||||| ||||||    
T  43245595 tatattaatatttgtatagctatat 43245571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 11792412 - 11792484
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||  ||||||||| ||||| |||| |||||| ||||| |||||| | ||||||||||||||||    
T  11792412 gactcggcggggatactgggtcaatgggtcaatggtcgaaccactgaatcattggtcgaaccgcatgactgaa 11792484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 23611612 - 23611540
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||  ||||||| | ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  23611612 gactcggcggggatactgggttaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 23611540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 55497505 - 55497553
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| |||| |||||| |||||||||||||| ||||||||||||||||    
T  55497505 tgggtcaatggtcgaaccactgagtcattgatcgaaccgcatgactgaa 55497553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 12704731 - 12704625
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    |||| |||| ||| ||||||||| |  || |||| |||||| |||||||||||||| ||||||||| ||||||| | || ||  || || ||||||||||    
T  12704731 gactaggcatgggtactgggtcactaagtcaatggtcgaaccactgagtcattgatcgaaccgcattactgaaccggatcaactcggatgactcggttag 12704632  T
Q  119 atgactc 125  Q
    || ||||    
T  12704631 ataactc 12704625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 38519331 - 38519384
Alignment:
Q  35 tgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgact 88  Q
    ||||||| |||||||||| |||||| | ||||||| || |||||||||||||||    
T  38519331 tgggtcactgggttaatggtcgaaccattgagtcactggttgaaccgcatgact 38519384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 6065583 - 6065401
Alignment:
Q  22 tcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatg 121  Q
    |||||||||| |||| |||| |||||||||| |||||| |||| ||||||| ||||||||||||||||||    ||||||||| ||||||||||| ||||    
T  6065583 tcggcaggggtactgagtcactgggttaatggtcgaaccactgggtcattggttgaaccgcatgactgaatcagattaaaccgaataactcggtttgatg 6065484  T
Q  122 actctg-tttaagattaacnnnnnnnaagtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaa 203  Q
    |||  |  |||||| |||        | ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||    
T  6065483 acttggccttaagaataattttttataggtatttaatcagattaaatcggattgaaccgatgactcggccacttaaaaactaa 6065401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 16106774 - 16106684
Alignment:
Q  35 tgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    ||||||| |||||||||| |||||| ||||||||| || ||||||||||||||||||  | ||||||||  ||||||||||||||||||||    
T  16106774 tgggtcactgggttaatggtcgaaccactgagtcactggttgaaccgcatgactgaatcggattaaaccagataactcggttagatgactc 16106684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 37484445 - 37484537
Alignment:
Q  33 actgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    ||||||||||||||||| ||||||||| | ||||||| || | |||||||||||  |||||| ||||||||| || |||||||||||||||||    
T  37484445 actgggtcattgggttattgatcgaaccattgagtcactggtcgaaccgcatgatggaactggattaaaccggatgactcggttagatgactc 37484537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 35305371 - 35305265
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||||||||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||| | || ||  || || ||||||||||    
T  35305371 gactcggcaggggtactgggtcactgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaaccggatcaactcggatgactcggttag 35305272  T
Q  119 atgactc 125  Q
    || ||||    
T  35305271 ataactc 35305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 10810633 - 10810536
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggtt 116  Q
    |||||||||  || ||||||||| ||||||||||||||||| |||| ||||| | ||||||||||||||||||    ||||||||| |||||||||||    
T  10810633 gactcggcaacggtactgggtcaatgggttaatgatcgaaccactgggtcatcggttgaaccgcatgactgaatcagattaaaccgaataactcggtt 10810536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 32878789 - 32878694
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcgg 114  Q
    |||||||| |||| ||||||||  ||||| |||| |||||| | |||||||||| | ||||||||| ||||||  ||||||||||| |||||||||    
T  32878789 gactcggcgggggtactgggtccctgggtcaatggtcgaaccaatgagtcattggtcgaaccgcataactgaatcgaattaaaccggataactcgg 32878694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 3988733 - 3988806
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    ||||||||||||  ||||||||||||||| |||| |||||  | || ||||||| |||||||||||||||||||    
T  3988733 gactcggcagggatactgggtcattgggtcaatggtcgaatcattgggtcattggttgaaccgcatgactgaac 3988806  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 21800758 - 21800638
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttag 118  Q
    ||||||| ||||| || |||||| ||||| |||| |||||  |||| |||| || |||||| |||||||||||  | |||||| || ||||||||||||     
T  21800758 gactcggtaggggtaccgggtcactgggtcaatggtcgaatcactgggtcactggttgaactgcatgactgaatcggattaaatcggataactcggttaa 21800659  T
Q  119 atgactctgt-ttaagattaa 138  Q
    ||||||| || ||||||||||    
T  21800658 atgactcggtcttaagattaa 21800638  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 23293261 - 23293189
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||||||  ||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  23293261 gactcggcgagggtactgggtcaatgggtgaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 23293189  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 24128781 - 24128853
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| ||||| |||||| | ||||||||||||||||    
T  24128781 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgaatcattggtcgaaccgcatgactgaa 24128853  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 26606583 - 26606663
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgac 123  Q
    |||||||| | |||||| ||||||| | || |||||| |||||||||||   |||||||||| ||||||||||||||||||    
T  26606583 tgggttaacggtcgaaccactgagttaatggttgaactgcatgactgaatcaaattaaaccgaataactcggttagatgac 26606663  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 17513048 - 17513117
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgact 88  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | |||| ||||||||    
T  17513048 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaactgcatgact 17513117  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 39678332 - 39678404
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||||| || ||||||||| || || |||| |||||  |||||||||||| | ||||||||||||||||    
T  39678332 gactcggcagaggtactgggtcaatgagtcaatggtcgaatcactgagtcattggtcgaaccgcatgactgaa 39678404  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 39061982 - 39061932
Alignment:
Q  41 attgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  39061982 attgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 39061932  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 10810489 - 10810444
Alignment:
Q  161 attaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    |||| ||||||||||| |||||||||| |||| |||||||||||||    
T  10810489 attagatcggattgaatcgatgactcggccacctaaaaactaaaaa 10810444  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 16457692 - 16457635
Alignment:
Q  149 gtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||||||| | |||| ||||| | |||||||||||||| ||| ||||||||||||||    
T  16457692 gtatttaaccatattagatcgggtcgaaccgatgactcggccatttaaaaactaaaaa 16457635  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 24934914 - 24934963
Alignment:
Q  67 tcattgattgaaccgcatgactgaactgaattaaaccgtataactcggtt 116  Q
    |||||| ||||||||||| ||||||||| |||||| || |||||||||||    
T  24934914 tcattggttgaaccgcataactgaactgtattaaatcggataactcggtt 24934963  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 25683606 - 25683655
Alignment:
Q  67 tcattgattgaaccgcatgactgaactgaattaaaccgtataactcggtt 116  Q
    |||||| ||||||||||| ||||||||| |||||| || |||||||||||    
T  25683606 tcattggttgaaccgcataactgaactgtattaaatcggataactcggtt 25683655  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 7153492 - 7153536
Alignment:
Q  47 ttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||| |||||| |||||||||||| | ||||||||||||||||    
T  7153492 ttaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 7153536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 16106588 - 16106532
Alignment:
Q  150 tatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    |||||||||| ||||||||| |||||  || |||||||| ||| |||||||||||||    
T  16106588 tatttaactagattaaatcgaattgactcggtgactcgatcacctaaaaactaaaaa 16106532  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 29523942 - 29523894
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  29523942 tgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 29523894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 31900457 - 31900505
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  31900457 tgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 31900505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 37314993 - 37314945
Alignment:
Q  43 tgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  37314993 tgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 37314945  T

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Target: scaffold0242 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 17926 - 17854
Alignment:
Q  20 actcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||||||| |||| ||||||||||||||| |||||| | |||||||||| |||||||||||||||||||    
T  17926 actcggcaggggtactgagtcattgggttaatggtcgaaccattgagtcattggttgaaccgcatgactgaac 17854  T

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Target: scaffold0116 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 7867 - 7940
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||||  || |||| ||||||||||||||| |||||| |||||||| ||| |||||||||||||||||||    
T  7867 gactcggcaaaggtactgagtcattgggttaatggtcgaaccactgagtcgttggttgaaccgcatgactgaac 7940  T

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Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 12749 - 12821
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaa 91  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | ||||||||||||||||    
T  12749 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 12821  T

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Target: scaffold0712 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 4872 - 4815
Alignment:
Q  149 gtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||||||| | ||||||||||||||||| ||||||||  ||||||||||||||||||    
T  4872 gtatttaaccagattaaatcggattgaactgatgactcagccacttaaaaactaaaaa 4815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 4892 - 4835
Alignment:
Q  149 gtatttaactacattaaatcggattgaaccgatgactcgaccacttaaaaactaaaaa 206  Q
    ||||||||| | ||||||||||||||||| ||||||||  ||||||||||||||||||    
T  4892 gtatttaaccagattaaatcggattgaactgatgactcagccacttaaaaactaaaaa 4835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 11108 - 11039
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgact 88  Q
    |||||||| |||| ||||||||| ||||| |||| |||||| |||||||||||| | |||||||||||||    
T  11108 gactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgact 11039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 7935 - 7842
Alignment:
Q  32 cactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaactgaattaaaccgtataactcggttagatgactc 125  Q
    |||||||||| || || | || |||||| |||||||||||| ||||| ||||||||||||| | |||||| || |||||||||||  |||||||    
T  7935 cactgggtcaatgagtcattggtcgaaccactgagtcattggttgaatcgcatgactgaaccgtattaaatcggataactcggttgtatgactc 7842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 51937 - 52010
Alignment:
Q  19 gactcggcaggggcactgggtcattgggttaatgatcgaactactgagtcattgattgaaccgcatgactgaac 92  Q
    |||||||| |||| ||||||||| || || |||| |||||| || ||||||||| |  ||||||||||||||||    
T  51937 gactcggcgggggtactgggtcaatgagtcaatggtcgaaccacagagtcattggtcaaaccgcatgactgaac 52010  T

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