View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_66 (Length: 289)

Name: NF16632_low_66
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_66
NF16632_low_66
[»] scaffold0054 (2 HSPs)
scaffold0054 (104-289)||(49909-50093)
scaffold0054 (146-247)||(28595-28696)
[»] chr1 (9 HSPs)
chr1 (108-289)||(46352111-46352291)
chr1 (108-289)||(18504971-18505150)
chr1 (108-289)||(7487054-7487235)
chr1 (109-281)||(26703836-26704004)
chr1 (108-279)||(19193465-19193637)
chr1 (178-289)||(42958415-42958526)
chr1 (108-270)||(46757696-46757855)
chr1 (108-195)||(15722975-15723062)
chr1 (62-102)||(46354927-46354967)
[»] chr7 (9 HSPs)
chr7 (108-289)||(3568744-3568923)
chr7 (108-289)||(39702791-39702972)
chr7 (142-289)||(48520159-48520306)
chr7 (61-102)||(3571550-3571591)
chr7 (108-195)||(1966596-1966683)
chr7 (154-237)||(12315105-12315188)
chr7 (154-237)||(18535950-18536033)
chr7 (153-247)||(1723566-1723660)
chr7 (177-247)||(13796416-13796486)
[»] chr5 (8 HSPs)
chr5 (108-289)||(38925671-38925850)
chr5 (118-245)||(32726599-32726725)
chr5 (108-289)||(42882719-42882901)
chr5 (109-283)||(22545467-22545638)
chr5 (206-289)||(35329017-35329099)
chr5 (206-289)||(35329414-35329497)
chr5 (61-102)||(43240059-43240100)
chr5 (61-102)||(38928493-38928534)
[»] chr2 (6 HSPs)
chr2 (108-289)||(25417313-25417494)
chr2 (177-289)||(5783222-5783334)
chr2 (108-270)||(29468400-29468563)
chr2 (117-289)||(13364223-13364386)
chr2 (110-234)||(25546396-25546519)
chr2 (154-237)||(44481602-44481685)
[»] chr8 (7 HSPs)
chr8 (108-289)||(22932275-22932455)
chr8 (108-289)||(7964597-7964779)
chr8 (108-289)||(8223960-8224142)
chr8 (135-289)||(16046816-16046970)
chr8 (206-289)||(44967652-44967735)
chr8 (108-191)||(43974358-43974441)
chr8 (226-289)||(43974458-43974521)
[»] chr3 (2 HSPs)
chr3 (108-288)||(7567200-7567379)
chr3 (153-247)||(54076934-54077028)
[»] chr6 (12 HSPs)
chr6 (108-289)||(23160445-23160623)
chr6 (108-289)||(31569523-31569704)
chr6 (109-283)||(21683406-21683577)
chr6 (1-102)||(17585794-17585895)
chr6 (109-283)||(20881650-20881821)
chr6 (108-289)||(15906744-15906926)
chr6 (109-289)||(18715504-18715685)
chr6 (152-281)||(20025459-20025588)
chr6 (108-289)||(14463722-14463904)
chr6 (108-281)||(18767403-18767572)
chr6 (177-289)||(21393062-21393174)
chr6 (110-226)||(14602679-14602795)
[»] scaffold0214 (2 HSPs)
scaffold0214 (108-289)||(21942-22123)
scaffold0214 (108-289)||(28898-29079)
[»] chr4 (6 HSPs)
chr4 (108-289)||(19111759-19111941)
chr4 (109-289)||(52374487-52374668)
chr4 (108-289)||(43593277-43593453)
chr4 (108-195)||(50377615-50377702)
chr4 (154-237)||(18811014-18811097)
chr4 (153-247)||(13757272-13757366)
[»] scaffold0557 (1 HSPs)
scaffold0557 (108-289)||(6666-6851)
[»] scaffold0041 (1 HSPs)
scaffold0041 (170-289)||(31985-32104)
[»] scaffold0159 (1 HSPs)
scaffold0159 (177-289)||(36685-36797)
[»] scaffold0590 (1 HSPs)
scaffold0590 (177-289)||(9248-9360)
[»] scaffold0283 (1 HSPs)
scaffold0283 (206-289)||(13786-13869)
[»] scaffold0760 (1 HSPs)
scaffold0760 (219-289)||(1-71)


Alignment Details
Target: scaffold0054 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 104 - 289
Target Start/End: Complemental strand, 50093 - 49909
Alignment:
104 tacccaaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||    
50093 tacccaaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgttgagaatgatttaatgtcttcatcaatctca-cc 49995  T
204 ccataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
49994 ccataaatgtctctcatgtttcacgcatattcatcctccatagatatatgaggatgcatcacaaaacaaagtatatattaagtaac 49909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 28595 - 28696
Alignment:
146 ggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccata 245  Q
    ||||| ||||||||||||||||  ||  || |||||||||||||| | || | ||||||| ||||| || ||||||||||||||| ||||||| | ||||    
28595 ggtttttgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaactcacccccgtaaatttcactcatgtttcatgcagattcatctttcata 28694  T
246 ga 247  Q
    ||    
28695 ga 28696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 46352291 - 46352111
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
46352291 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgattta-tgtcttcatcaatcccacccccat 46352193  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
46352192 aaatgtctctcatgttttatgcatattcatcctccatagatagatgaggatgcatcacaaaacaaagtatatattaagtaac 46352111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 18505150 - 18504971
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||||||||||||||||| | |||||||||||||||||  |||||||||||||| | |||||| ||||||||||||||||||| |||||||||||    
18505150 caaatggctcgagaaataatatagagcatatgtgtactggttt--gtaaattgtgttagagatgagaaagatttaatgtcttcatcaaacccacccccat 18505053  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||| ||||||||| ||||||||||||||||||||||   ||||| ||| | || ||||| |||||||||||| |||||    
18505052 aaatgtcactcatgtttaatgcatattcatcctccatagatagatgagtatgtaccataaaactaagtatatattacgtaac 18504971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 7487054 - 7487235
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||||||||||||||||| | ||||| ||||||  |||||||||||||| |||  | |  ||| ||||||| ||||||||||| |||||||||||    
7487054 caaatggctcgagaaataatatagagcatatttgtactaatttctgtaaattgttttaaggatatgaaagatttaaagtcttcatcaaacccacccccat 7487153  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||| ||||||||||||| ||||||||||||||||||   ||||| |||||||||||||| ||||||||||||||||||    
7487154 aaatgtcactcatgtttcatgtatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaac 7487235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 109 - 281
Target Start/End: Complemental strand, 26704004 - 26703836
Alignment:
109 aaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccata 208  Q
    |||||||||||||||||||||| | |||||| |||||||||  |||||||||| |||| | || | | |||||||||| ||||||| |||||||   |||    
26704004 aaatggctcgagaaataatatagagcatatgcgtactggtta-tgtaaattgtcttagagatggggaagatttaatgttttcatcagtcccacc---ata 26703909  T
209 aatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatat 281  Q
    |||||| ||||||||||||||||||||||||||||||||   ||||| |||||||||||||| ||||||||||    
26703908 aatgtcactcatgtttcatgcatattcatcctccatagaaagatgagtatgcatcacaaaactaagtatatat 26703836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 279
Target Start/End: Original strand, 19193465 - 19193637
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    ||||||||| ||||||||||||| | ||||||||||||  ||| ||||||||||||||||||  | ||| ||||||||||||||||||| || | |||||    
19193465 caaatggcttgagaaataatatagagcatatgtgtactatttttctgtaaattgtgttagcgaagggaaagatttaatgtcttcatcaaaccaatcccca 19193564  T
207 taaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatat 279  Q
    |||  ||| |||||||||||||||||||||||||| ||  |   ||||| |||||||||||||| ||||||||    
19193565 taacggtcactcatgtttcatgcatattcatcctctatgtatagatgagtatgcatcacaaaactaagtatat 19193637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 289
Target Start/End: Original strand, 42958415 - 42958526
Alignment:
178 atttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtat 277  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||    | ||| |||||||||||||| || |||    
42958415 atttaatgtcttcatcaaacccgcccccataaatgtcactcatgtttcatgcatattcatcctccatagttagacgagtatgcatcacaaaactaattat 42958514  T
278 atattaagtaac 289  Q
    ||||||||||||    
42958515 atattaagtaac 42958526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 270
Target Start/End: Original strand, 46757696 - 46757855
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    |||||||||||| |||||||||  | |||||| ||||| || |  ||||||||||||||   |||||| ||||||||||||||||||| || |||||| |    
46757696 caaatggctcgaaaaataatatg-agcatatgcgtacttgtat--gtaaattgtgttagttatgagaaagatttaatgtcttcatcaaacctacccccgt 46757792  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaac 270  Q
    ||||||  || |||||||||||||||||||| ||| ||||   ||||| |||||| |||||||    
46757793 aaatgtgacttatgtttcatgcatattcatcttccctagatagatgagtatgcataacaaaac 46757855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 15722975 - 15723062
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaa 195  Q
    ||||||||||||||||||||||| | || ||||||| || ||||| ||||| || ||| || || ||| |||||||||||||||||||    
15722975 caaatggctcgagaaataatatagagcacatgtgtaatgatttctataaatcgttttaacgatgggaaagatttaatgtcttcatcaa 15723062  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 46354967 - 46354927
Alignment:
62 tatttcttatattttggttacattctagccctctagaaaca 102  Q
    ||||||| |||||||||||||||||||||||||||||||||    
46354967 tatttctaatattttggttacattctagccctctagaaaca 46354927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 3568923 - 3568744
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||    
3568923 caaatgactcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagc-ctgagaatggttta-tgtcttcatcaatcccacccccat 3568826  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
3568825 aaatgtctctcatgttttatgcatattcatcctccatagatagatgaggatgcatcacaaaacaaagtatatattaagtaac 3568744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 39702791 - 39702972
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||||||||||||||||| | ||||| ||||||| |||||||||||||| |||  | |  ||| ||||||| ||||||||||| |||||||||||    
39702791 caaatggctcgagaaataatatagagcatatttgtactgatttctgtaaattgttttaaggatatgaaagatttaaagtcttcatcaaacccacccccat 39702890  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||| ||||||||||||| ||||||||||||||||||   ||||| |||||| ||||||| ||||||||||||||||||    
39702891 aaatgtcactcatgtttcatgtatattcatcctccatagatagatgagtatgcattacaaaactaagtatatattaagtaac 39702972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 289
Target Start/End: Complemental strand, 48520306 - 48520159
Alignment:
142 tactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctc 241  Q
    |||||||||||| ||||||||||||   |||||| |||||||||| |||||||| | |||| || ||||  || |||||||||||| |||||| ||| ||    
48520306 tactggtttctgcaaattgtgttagttttgagaaagatttaatgttttcatcaaacacacctccgtaaacttcactcatgtttcatccatattaatcttc 48520207  T
242 catagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||   ||||| ||||||| |||||| |||||| ||||| |||||    
48520206 catagatagatgagtatgcatcgcaaaactaagtatgtattaggtaac 48520159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 3571591 - 3571550
Alignment:
61 ttatttcttatattttggttacattctagccctctagaaaca 102  Q
    |||||||| |||||||||||||||||||||||||||||||||    
3571591 ttatttctaatattttggttacattctagccctctagaaaca 3571550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 1966683 - 1966596
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaa 195  Q
    |||||| || ||||||||||||| | || ||||||| || ||||| |||||||| ||| || || ||| |||||||||||||||||||    
1966683 caaatgacttgagaaataatatagagcacatgtgtaatgatttctataaattgttttaacgatgggaaagatttaatgtcttcatcaa 1966596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 12315188 - 12315105
Alignment:
154 taaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcat 237  Q
    ||||||| ||||||| |  ||| |||||| ||||||| | || ||||| ||||||||| || ||||||||||||||||||||||    
12315188 taaattgggttagcggtaggaaagatttattgtcttcgtgaaacccactcccataaatttcactcatgtttcatgcatattcat 12315105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 18536033 - 18535950
Alignment:
154 taaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcat 237  Q
    ||||||||||||||| |  ||| |||||| ||||||| | || ||||| | ||||||| || ||||||||||||||||||||||    
18536033 taaattgtgttagcggtaggaaagatttattgtcttcgtgaaacccactcgcataaatttcactcatgtttcatgcatattcat 18535950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 1723660 - 1723566
Alignment:
153 gtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccataga 247  Q
    |||||||||||||||  |  ||| |||||||||| ||| | || ||||||||| || || |  ||||||||||||||||||||||| ||||||||    
1723660 gtaaattgtgttagcagtaggaaagatttaatgttttcgtgaaacccacccccttatattttactcatgtttcatgcatattcatcttccataga 1723566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 13796416 - 13796486
Alignment:
177 gatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccataga 247  Q
    |||||||||||||| | || | |||||| |||||| || ||||||||||||||| ||||||| | ||||||    
13796416 gatttaatgtcttcgtgaaactcaccccaataaatttcactcatgtttcatgcagattcatctttcataga 13796486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 38925850 - 38925671
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||    
38925850 caaatgactcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagc-ctgagaatggttta-tgtcttcatcaatcccacccccat 38925753  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
38925752 aaatgtctctcatgttttatgcatattcatcctccatagatagatgaggatgcatcacaaaacaaagtatatattaagtaac 38925671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 32726599 - 32726725
Alignment:
118 gagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctct 217  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||  ||| ||||||||||||| ||    
32726599 gagaaataatatagagcatatgtgtactggtttctttaaattgtgttagcgatgagaaagatttaatggcttcatcaaaacca-ccccataaatgtcact 32726697  T
218 catgtttcatgcatattcatcctccata 245  Q
    ||||||||||||||||||||| ||||||    
32726698 catgtttcatgcatattcatcatccata 32726725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 42882719 - 42882901
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    |||||| || || |||||||||| | ||||||| ||||| ||| ||||||| |||||||||| ||  || |||||||| |||||||||| || |||| ||    
42882719 caaatgacttgataaataatatagagcatatgtttactgtttttctgtaaaatgtgttagcgatggaaaagatttaatatcttcatcaaaccaaccctca 42882818  T
207 taaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||| || | ||||||||||||||||||||||||||||||||   ||||  |||||||||||||| ||||||||||||||||||    
42882819 taactgccactcatgtttcatgcatattcatcctccatagatagatgattatgcatcacaaaactaagtatatattaagtaac 42882901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 22545467 - 22545638
Alignment:
109 aaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccata 208  Q
    |||||||| ||||| ||||||| |  |||| ||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||| || | |||||||    
22545467 aaatggctggagaa-taatatagagtatatatgtactgctttctgtaaattgtgttagcgttgggaaagatttaatgtcttcatcaaacctatccccata 22545565  T
209 aatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatatta 283  Q
    | |||| ||||||||||||||||||  ||||| ||||||   |||||  ||||||||||||| ||||||||||||    
22545566 attgtcactcatgtttcatgcatat--atcctacatagatagatgagtttgcatcacaaaactaagtatatatta 22545638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 35329099 - 35329017
Alignment:
206 ataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    |||| |||| |||||||||||||||||||||||||||||||    ||||| |||||||||||||| ||||||||||||||||||    
35329099 ataattgtcactcatgtttcatgcatattcatcctccataggtaaatgagtatgcatcacaaaac-aagtatatattaagtaac 35329017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 35329497 - 35329414
Alignment:
206 ataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    |||| |||| ||||||||| |||||||||||||||||||||    ||||| |||||||||||||| ||||||||||||||||||    
35329497 ataattgtcactcatgttttatgcatattcatcctccataggtaaatgagtatgcatcacaaaactaagtatatattaagtaac 35329414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 43240059 - 43240100
Alignment:
61 ttatttcttatattttggttacattctagccctctagaaaca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||    
43240059 ttatttcttatattttggttacattctagccctctagaaaca 43240100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 38928534 - 38928493
Alignment:
61 ttatttcttatattttggttacattctagccctctagaaaca 102  Q
    |||||||| |||||||||||||||||||||||||||||||||    
38928534 ttatttctaatattttggttacattctagccctctagaaaca 38928493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 25417494 - 25417313
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||| ||||||||||||| | ||||| |||||||||||||||||||  ||||||||||| |||  |||||||||||||||||| |||||||||||    
25417494 caaatggcttgagaaataatatagagcatatctgtactggtttctgtaaatcatgttagcgctgggaaaaatttaatgtcttcatcaaacccacccccat 25417395  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    || |||||||||||||||||||||||||||||||||||||   ||||| |||||||||||| | |||||| |||||| ||||    
25417394 aactgtctctcatgtttcatgcatattcatcctccatagatagatgagtatgcatcacaaacctaagtatgtattaaataac 25417313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 5783222 - 5783334
Alignment:
177 gatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagta 276  Q
    |||||| ||||||||||||  || |||||||||||||| ||||| |||||||||||||||||||||||| |   ||||| |||||||||||||| |||||    
5783222 gatttattgtcttcatcaaatccgcccccataaatgtcactcatatttcatgcatattcatcctccatatatagatgagtatgcatcacaaaactaagta 5783321  T
277 tatattaagtaac 289  Q
    |||||||||||||    
5783322 tatattaagtaac 5783334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 270
Target Start/End: Original strand, 29468400 - 29468563
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    ||||||||| || |||||||||| | ||||||| || || ||| ||||||| |||||||||| ||  || |||||||| |||||||||| || |||| ||    
29468400 caaatggcttgataaataatatagagcatatgtttattgtttttctgtaaaatgtgttagcgatggaaaagatttaatatcttcatcaaaccaaccctca 29468499  T
207 taaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaac 270  Q
    ||| || | ||||||||||||| |||||||||||||||| |  |||||| ||||||||||||||    
29468500 taactgccactcatgtttcatggatattcatcctccataaatatatgagtatgcatcacaaaac 29468563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 117 - 289
Target Start/End: Original strand, 13364223 - 13364386
Alignment:
117 cgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctc 216  Q
    |||||||||||||| | |||||||||| || ||| |||||||||||||||||||  ||  |||||||||||||||         ||||||||| |||| |    
13364223 cgagaaataatatagagcatatgtgtattgatttatgtaaattgtgttagcgcttggatagatttaatgtcttca---------cccccataactgtcac 13364313  T
217 tcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    |||||||| || ||||||||||||||||| |   ||||| |||||||||||||| | ||||||||||| ||||    
13364314 tcatgttttattcatattcatcctccatatatagatgagtatgcatcacaaaactacgtatatattaattaac 13364386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 25546519 - 25546396
Alignment:
110 aatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataa 209  Q
    ||||||| ||||||||||||| | |||||||||| | ||||||||||||||||||||| ||| ||| ||||||| ||||| ||||| |||| | ||||||    
25546519 aatggcttgagaaataatataaagcatatgtgtattagtttctgtaaattgtgttagcactgggaaagatttaaagtctttatcaaaccca-ctccataa 25546421  T
210 atgtctctcatgtttcatgcatatt 234  Q
    || ||   ||||||||||| |||||    
25546420 atttcaaccatgtttcatgaatatt 25546396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 44481685 - 44481602
Alignment:
154 taaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcat 237  Q
    ||||||||||||||| |  ||| |||||| ||||||| | || ||||| | ||||||| || ||||||||||||||||||||||    
44481685 taaattgtgttagcggtaggaaagatttattgtcttcgtgaaacccactcgcataaatttcactcatgtttcatgcatattcat 44481602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 22932455 - 22932275
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||| ||||||||||||| |  |||| ||||||||||||||||||| |||||||||||| |||  |||||||||||||||||| |||||||||||    
22932455 caaatggcttgagaaataatatagagaatatctgtactggtttctgtaaatcgtgttagcgctgggaaatatttaatgtcttcatcaaacccacccccat 22932356  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    || ||||||||||||||||||||||||||||||| |||||   ||||| ||||||||| |||| |||||| |||||| ||||    
22932355 aactgtctctcatgtttcatgcatattcatcctcaatagatagatgagtatgcatcac-aaactaagtatgtattaaataac 22932275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 7964597 - 7964779
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    ||||||||| || |||||||||| | ||||||| ||||| ||| || |||| |||||||||| ||  || |||||||| |||||||||| || |||| ||    
7964597 caaatggcttgataaataatatagagcatatgtttactgtttttctataaaatgtgttagcgatggaaaagatttaatatcttcatcaaaccaaccctca 7964696  T
207 taaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||| || | ||||||||||||||||||||||||||||||||   ||||| |||||||||||| | ||||||||||||||||||    
7964697 taactgccactcatgtttcatgcatattcatcctccatagataaatgagtatgcatcacaaagctaagtatatattaagtaac 7964779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 8224142 - 8223960
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    ||||||||| || |||||||||| | ||||||| ||||| ||| ||||||| |||||||||| ||  || |||||||| |||||||||| || |||| ||    
8224142 caaatggcttgataaataatatagagcatatgtttactgtttttctgtaaaatgtgttagcgatggaaaagatttaatatcttcatcaaaccaaccctca 8224043  T
207 taaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||| || | ||||||||||||| ||||||||||||||||||   ||||  |||||||||||||| || |||||||||||||||    
8224042 taactgccactcatgtttcatgtatattcatcctccatagatagatgattatgcatcacaaaactaaatatatattaagtaac 8223960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 289
Target Start/End: Original strand, 16046816 - 16046970
Alignment:
135 atatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatatt 234  Q
    ||||||||||| ||||||||||||||| ||| || || ||| ||||||| ||||||||||| ||||||  |||||||||  |||||||||||||  ||||    
16046816 atatgtgtactagtttctgtaaattgttttaacgatgggaaagatttaaagtcttcatcaaacccaccttcataaatgtaactcatgtttcatgtgtatt 16046915  T
235 catcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    |||||||||||||   ||| | |||||||||||| | ||||||||||||||||||    
16046916 catcctccatagatagatgggtatgcatcacaaagctaagtatatattaagtaac 16046970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 44967735 - 44967652
Alignment:
206 ataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    |||| |||| |||||||||||||||||||||||||||||||    ||||| |||||||||||||| ||||||||||||||||||    
44967735 ataattgtcactcatgtttcatgcatattcatcctccataggtaaatgagtatgcatcacaaaactaagtatatattaagtaac 44967652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 43974358 - 43974441
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttca 191  Q
    |||||||||||||||||||||||   |||||||||| |||||| |||||||||||||||||||  ||  |||||||||||||||    
43974358 caaatggctcgagaaataatatagtgcatatgtgtattggtttatgtaaattgtgttagcgcttggatagatttaatgtcttca 43974441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 43974458 - 43974521
Alignment:
226 atgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||||||||||||||||||   ||||| || ||||||||||| |  |||||||||||||||    
43974458 atgcatattcatcctccatagatagatgagtatacatcacaaaactacatatatattaagtaac 43974521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 108 - 288
Target Start/End: Complemental strand, 7567379 - 7567200
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||| ||| ||| |||||||| |||||| ||| |||||||||||    
7567379 caaatggctcgagaaataatatagaccatatgtgtac-ggtttctgtaaattatgttagcactgggaaagatttaatatcttcagcaaacccacccccat 7567281  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaa 288  Q
    || |||| |||||||||||||||||||||||| |||||||   ||||| ||||||| |||| | |||||||||||||||||    
7567280 aattgtcactcatgtttcatgcatattcatccaccatagatagatgagtatgcatcccaaacctaagtatatattaagtaa 7567200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 54077028 - 54076934
Alignment:
153 gtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccataga 247  Q
    |||||||||||||||  || ||| |||||||||||||| | || ||||||||| || || |  ||||||||||||||||||||||| ||||||||    
54077028 gtaaattgtgttagcaatgggaaagatttaatgtcttcgtgaaacccacccccgtatattttactcatgtttcatgcatattcatcttccataga 54076934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 23160445 - 23160623
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||| ||||||||||||||| | ||||||||||||||||| |||||||||| ||| || || ||| ||||||| ||||||||||| ||||||   ||    
23160445 caaatggatcgagaaataatatagagcatatgtgtactggtttttgtaaattgttttaacgatgggaaagatttaaagtcttcatcaaacccacc---at 23160541  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
     |||||| ||||||||||||| ||||||||||||||||||   ||||| |||||||||||||| ||||||||||||||||||    
23160542 taatgtcactcatgtttcatgtatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaac 23160623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 31569704 - 31569523
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |||  | |  |||  |||||| ||||||||||| |||||||||||    
31569704 caaatggctcgagaaataatatagagcatatgtgtactgatttctgtaaattgttttaaggataggaaatatttaaagtcttcatcaaacccacccccat 31569605  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||| |||||||| |||| ||||||||| | ||||||   ||||| |||||||||||||| ||||||||||||||||||    
31569604 aaatgtcactcatgttccatgtatattcatctttcatagataaatgagtatgcatcacaaaactaagtatatattaagtaac 31569523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 109 - 283
Target Start/End: Complemental strand, 21683577 - 21683406
Alignment:
109 aaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccata 208  Q
    |||||||||||||| ||||||| |  |||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||    
21683577 aaatggctcgagaa-taatatagagtatatatgtactgctttctgtaaattgtgttagcgatgagaaagatttaatgtcttcatcaaacccatccccata 21683479  T
209 aatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatatta 283  Q
    | |||| ||||||||||||||||||  ||||| ||||||   |||||  ||||||||||||| ||||||||||||    
21683478 attgtcactcatgtttcatgcatat--atcctacatagatagatgagtttgcatcacaaaactaagtatatatta 21683406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 17585794 - 17585895
Alignment:
1 taacatatttttattggtgtagcctaatttacgttccataaaacttctaaaatgagttggttatttcttatattttggttacattctagccctctagaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||| |||    
17585794 taacatatttttattggtgtagcctaatttacattccataaaacttctaaagggagttggttttttcttatattttggttatattctagccctctaaaaa 17585893  T
101 ca 102  Q
    ||    
17585894 ca 17585895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 20881650 - 20881821
Alignment:
109 aaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccata 208  Q
    |||||||||||||| ||||||| |  |||| ||||||| ||||||||||||||||||||| || ||| |||||||| |||||||||| |||| |||||||    
20881650 aaatggctcgagaa-taatatagagtatatatgtactgctttctgtaaattgtgttagcgttgggaaagatttaatatcttcatcaaacccatccccata 20881748  T
209 aatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatatta 283  Q
    | |||| ||||||||||||||||||  ||||| ||||||   |||||  ||||||||||||| ||||||||||||    
20881749 attgtcactcatgtttcatgcatat--atcctacatagatagatgagtttgcatcacaaaactaagtatatatta 20881821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 15906744 - 15906926
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    ||||||||| || |||||||||| | ||||||| || || ||| ||||||| |||||||||| ||  || |||||||| |||||||||| || |||| ||    
15906744 caaatggcttgataaataatatagagcatatgtttattgtttttctgtaaaatgtgttagcgatggaaaagatttaatatcttcatcaaaccaaccctca 15906843  T
207 taaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||| || | |||||||| |||||||||||||||||||||||   ||||| |||||||||||||| ||||||||||||||||||    
15906844 taactgccactcatgttgcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaac 15906926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 18715685 - 18715504
Alignment:
109 aaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    |||||||| || |||||||||| | ||||||| ||||| ||| || |||| |||||||||| ||  || |||||||| |||||||||| || |||| |||    
18715685 aaatggcttgataaataatatagagcatatgtttactgtttttctctaaaatgtgttagcgatggaaaagatttaatatcttcatcaaaccaaccctcat 18715586  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||   || ||||||||||||||||||||||||||||||||   ||||| |||||||||||||| |||||||| |||||||||    
18715585 aaccatcactcatgtttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatgttaagtaac 18715504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 20025459 - 20025588
Alignment:
152 tgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccatagagtta 251  Q
    ||||||||||||||| | | |||| ||||||||||||||||||| ||||| |||||||||||| |||||||| |||| ||||||||||| ||||||   |    
20025459 tgtaaattgtgttagagataagaaagatttaatgtcttcatcaaacccacacccataaatgtcactcatgttccatgtatattcatccttcatagataga 20025558  T
252 tgaggatgcatcacaaaacaaagtatatat 281  Q
    |||| |||||||||||||| ||||||||||    
20025559 tgagtatgcatcacaaaactaagtatatat 20025588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 14463904 - 14463722
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    ||||||||| || |||||||||| | ||||||| || || ||| ||||||| ||||| |||| ||  || |||||||| |||||||||| || ||||  |    
14463904 caaatggcttgataaataatatagagcatatgtttattgtttttctgtaaaatgtgtcagcgatggaaaagatttaatatcttcatcaaaccaaccctta 14463805  T
207 taaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||| || | ||||||||||||||||||||||||||||||||   ||||| |||| ||||||||| ||||||||||||||||||    
14463804 taactgccactcatgtttcatgcatattcatcctccatagatagatgagtatgcttcacaaaactaagtatatattaagtaac 14463722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 108 - 281
Target Start/End: Original strand, 18767403 - 18767572
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||||||||||||||||  | |||||| |||||||| |  |||||||||||||| | ||||||  |||||||||||||||||| |||| |||| |    
18767403 caaatggctcgagaaataatatg-agcatatgcgtactggtat--gtaaattgtgttagagatgagaaaaatttaatgtcttcatcaaaccca-ccccgt 18767498  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatat 281  Q
    ||||||  |||||||||||||||||||||||  || ||||   ||||| |||||||||||||| ||||||||||    
18767499 aaatgtgactcatgtttcatgcatattcatctaccctagatagatgagtatgcatcacaaaactaagtatatat 18767572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 21393062 - 21393174
Alignment:
177 gatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagta 276  Q
    |||||||||||||||||||   || |||||||||||||  | ||||||||||||||||||||||||||| |   ||||| |||||||||||||| || ||    
21393062 gatttaatgtcttcatcaaattcatccccataaatgtcagttatgtttcatgcatattcatcctccatatatagatgagtatgcatcacaaaactaacta 21393161  T
277 tatattaagtaac 289  Q
    |||||||||||||    
21393162 tatattaagtaac 21393174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 14602679 - 14602795
Alignment:
110 aatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataa 209  Q
    ||||||| ||||||||||||| | |||||||||| || | ||||||||||||||||| | || |||  ||||||| ||||||||||  ||| ||||||||    
14602679 aatggcttgagaaataatatagagcatatgtgtattgatatctgtaaattgtgttagtgatgtgaaatatttaatatcttcatcaaatccatccccataa 14602778  T
210 atgtctctcatgtttca 226  Q
    || || || ||||||||    
14602779 atttcactaatgtttca 14602795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 22123 - 21942
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||| |||||||||| || | ||||| ||||||||||||||||||| ||||||||||||  || ||||||||||||||||||| || | ||||||    
22123 caaatggcttgagaaataatctatagcatatatgtactggtttctgtaaatcgtgttagcgctggaaaagatttaatgtcttcatcaaacctagccccat 22024  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    || | |||||| ||||||||||||||||||||| ||||||   ||||| |||||||||||| | |||||| |||||| ||||    
22023 aactatctctcttgtttcatgcatattcatccttcatagatagatgagtatgcatcacaaacctaagtatgtattaaataac 21942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 28898 - 29079
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    ||||||||||||||||||||||| | ||||||||||||| | |||||||||||| |||  | |  ||| ||||||| |||||||||||  ||||||||||    
28898 caaatggctcgagaaataatatagagcatatgtgtactgatgtctgtaaattgtcttaaggatatgaaagatttaaagtcttcatcaaatccacccccat 28997  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||| ||||||||||||   ||||||||||||||||    ||||| |||||||||||||| ||||||||||||||||||    
28998 aaatgtcactcatgtttcatttttattcatcctccataggtagatgagtatgcatcacaaaactaagtatatattaagtaac 29079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 19111759 - 19111941
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    ||||||||| || ||||||||||   ||||||| ||||| ||| ||||||| |||||||||| ||| || |||||||| ||||||||||  | |||| ||    
19111759 caaatggcttgataaataatatagtgcatatgtttactgtttttctgtaaaatgtgttagcgatgaaaaagatttaatatcttcatcaaatcaaccctca 19111858  T
207 taaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||| |||| ||||||||||||||||||||||||||||||||   ||||| |||||||||||||| ||||||||||||||||||    
19111859 taactgtcactcatgtttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaac 19111941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 52374668 - 52374487
Alignment:
109 aaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    |||||||| || |||||||||| | ||||||| ||||| ||| || |||| |||||||||| ||  || |||||||| |||||||||| || |||| |||    
52374668 aaatggcttgataaataatatagagcatatgtttactgtttttctataaaatgtgttagcgatggaaaagatttaatatcttcatcaaaccaaccctcat 52374569  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    || |||| |||||||||||||||||||| |||||||||||   ||||| |||||||||||||| ||||||||||||||||||    
52374568 aactgtcactcatgtttcatgcatattcgtcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaac 52374487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 43593277 - 43593453
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccat 207  Q
    |||||||||||||||||||||||   ||||||||||||   ||  |||||||||||||  | || |||||||||| |||||||||||| |||||||  ||    
43593277 caaatggctcgagaaataatatagggcatatgtgtact---ttaggtaaattgtgttaatgatgggaatgattta-tgtcttcatcaaacccaccct-at 43593371  T
208 aaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    || |||| ||||||||||||||||||||||||||||||||   ||||  |||||||||||||| ||||||||||||||||||    
43593372 aattgtcactcatgtttcatgcatattcatcctccatagatcgatgactatgcatcacaaaactaagtatatattaagtaac 43593453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 50377702 - 50377615
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggtttctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaa 195  Q
    ||||||||||||||||||||||| | || ||||||| || ||||| |||||||| ||| || || ||| |||||||||||||||||||    
50377702 caaatggctcgagaaataatatagagcacatgtgtaatgatttctataaattgttttaacgatgggaaagatttaatgtcttcatcaa 50377615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 18811014 - 18811097
Alignment:
154 taaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcat 237  Q
    ||||||||||||||| |  ||| |||||| ||||||| | || ||||| ||||||||| || ||||||||||||||||||||||    
18811014 taaattgtgttagcggtaggaaagatttattgtcttcgtgaaacccactcccataaatttcactcatgtttcatgcatattcat 18811097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 13757366 - 13757272
Alignment:
153 gtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccataga 247  Q
    |||||||||||||||  |  ||| |||||||||| ||| | || |||||||||||| || |  ||||||||||||||||||||||| ||||||||    
13757366 gtaaattgtgttagcagtaggaaagatttaatgtattcgtgaaacccacccccatatattttactcatgtttcatgcatattcatcttccataga 13757272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 6851 - 6666
Alignment:
108 caaatggctcgagaaataatatacaacatatgtgtactggttt-ctgtaaattgtgttagcgctgagaatgatttaatgtcttcatcaatcccaccccca 206  Q
    ||||||||| || |||||||||| | ||||||| ||||| ||| ||||||| |||||||||| ||  || |||||||| |||||||||| || |||| ||    
6851 caaatggcttgataaataatatagagcatatgtttactgtttttctgtaaaatgtgttagcgatggaaaagatttaatatcttcatcaaaccaaccctca 6752  T
207 taaatgtctctcat---gtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||| |||| |||||   |||||||||||||||||||||||||||   ||||| |||||||||||||| ||||||||||||||||||    
6751 taactgtcactcatcatgtttcatgcatattcatcctccatagatagatgagtatgcatcacaaaactaagtatatattaagtaac 6666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 31985 - 32104
Alignment:
170 tgagaatgatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaa 269  Q
    |||||| ||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||   |||||  |||||||||||     
31985 tgagaaagatttaatgtcttcatcaaacccacccccataactatctctcatgtttcatgcatattcatcctccatagatagatgagtgtgcatcacaaac 32084  T
270 caaagtatatattaagtaac 289  Q
    | |||||| |||||| ||||    
32085 ctaagtatgtattaaataac 32104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 36685 - 36797
Alignment:
177 gatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagta 276  Q
    |||||| ||||||||||||  || |||||||||||||| ||||| |||||||||||||||||||||||| |   ||||| |||||||||||||| |||||    
36685 gatttattgtcttcatcaaatccgcccccataaatgtcactcatatttcatgcatattcatcctccatatatagatgagtatgcatcacaaaactaagta 36784  T
277 tatattaagtaac 289  Q
    |||||||||||||    
36785 tatattaagtaac 36797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 289
Target Start/End: Complemental strand, 9360 - 9248
Alignment:
177 gatttaatgtcttcatcaatcccacccccataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagta 276  Q
    |||||||||||||||||||  ||| |||||||||||||  | ||||||||||||||||||||||||||| |   ||||| |||||||||||||| || ||    
9360 gatttaatgtcttcatcaaatccatccccataaatgtcagtgatgtttcatgcatattcatcctccatatatagatgagtatgcatcacaaaactaacta 9261  T
277 tatattaagtaac 289  Q
    |||||||||||||    
9260 tatattaagtaac 9248  T

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Target: scaffold0283 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 13869 - 13786
Alignment:
206 ataaatgtctctcatgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    |||| |||| |||||||||||||||||||||||||||||||    ||||| |||||||||||||| ||||||||||||||||||    
13869 ataattgtcactcatgtttcatgcatattcatcctccataggtaaatgagtatgcatcacaaaactaagtatatattaagtaac 13786  T

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Target: scaffold0760 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 1 - 71
Alignment:
219 atgtttcatgcatattcatcctccatagagttatgaggatgcatcacaaaacaaagtatatattaagtaac 289  Q
    ||||||||||||||||||||||||||||    | ||| |||||||||||||| || |||||||||||||||    
1 atgtttcatgcatattcatcctccatagttagacgagtatgcatcacaaaactaattatatattaagtaac 71  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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