View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_75 (Length: 255)
Name: NF16632_low_75
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 16174063 - 16173842
Alignment:
| Q |
16 |
aaaatatgattctaaacatcaaaatatattaagaaggcctttaaatttatcataagaacttcatattgagatcataaccatctcatgggaacatcaaatt |
115 |
Q |
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| T |
16174063 |
aaaatatgattctaaacatcaaaatatattaagaaggcctttaaatttatcataagaacttcatattgagatcataaccatctcatgggaacatcaaatt |
16173964 |
T |
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| Q |
116 |
aacaatattaaccaaggaaatagcagatcaaatgcaaacatcatgtcaatcataagatcaaaattcttcaataaaagagaacttgaaagtacaaatcaga |
215 |
Q |
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| T |
16173963 |
aacaatattaaccaaggaaatagcagatcaaatgcaaacatcatgtcaatcataagatcaaaattcttcaataaaagagaacttgaaagtacaaatcaga |
16173864 |
T |
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| Q |
216 |
agcacttcagattacatattag |
237 |
Q |
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||||||||||||||||| |||| |
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| T |
16173863 |
agcacttcagattacatcttag |
16173842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 34483388 - 34483308
Alignment:
| Q |
31 |
acatcaaaatatattaagaaggcctttaaatttatcataagaacttcatattgagatcataaccatctcatgggaacatca |
111 |
Q |
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|||||||||| | ||||||||| ||| | |||||||| ||| ||||| | ||||||||||| |||||||||||||||||| |
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| T |
34483388 |
acatcaaaatgtgttaagaaggacttcagatttatcagaagttcttcagaatgagatcataaacatctcatgggaacatca |
34483308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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