View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_82 (Length: 242)
Name: NF16632_low_82
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22277252 - 22277475
Alignment:
| Q |
1 |
ctgccaccagccataaagacctgcagaaacattaacaatttttgtcttcaaccaccaaaaagacatatgttttaccgaatctataagctgggaaaaatat |
100 |
Q |
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| T |
22277252 |
ctgccaccagccataaagacctgtagaaacattaacaatttttgtcttcaaccaccaaaaagacatatgttttactgaatctataagttgggaaaaatat |
22277351 |
T |
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| Q |
101 |
tttttgcataaaattaaagaccttgttgtttctttcctgccagatgacccaaacacaagaaaaccaa-atcaaatccataaaagagcgtcttgctttcga |
199 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||| |
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| T |
22277352 |
tttttccataaaattaaagaccttgttgtttctttcctgccagatgacccaaacacaagtaaaccaacatcaaat---gaaaagagcgtctttctttcga |
22277448 |
T |
|
| Q |
200 |
gccacctgccatattagcatataaaat |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22277449 |
gccacctgccatattagcatataaaat |
22277475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 23413696 - 23413757
Alignment:
| Q |
109 |
taaaattaaagaccttgttgtttctttcctgccagatgacccaaacacaagaaaaccaaatc |
170 |
Q |
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| T |
23413696 |
taaaattaaagaccctattatttctttccatccggatgacccaaacacaagtaaactaaatc |
23413757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 23772551 - 23772449
Alignment:
| Q |
118 |
agaccttgttgtttctttcctgccagatgacccaaacacaagaaaaccaaatcaaatccataaaagagcgtcttgctttcgagccacctgccatattagc |
217 |
Q |
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| T |
23772551 |
agaccctgttatttctttcctgcgagatgatctaaacacaagtaaaccaaatcaagtgcataaaagaatgccatgctttcgaaccacctagcagattagc |
23772452 |
T |
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| Q |
218 |
ata |
220 |
Q |
| |
|
||| |
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| T |
23772451 |
ata |
23772449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 41353683 - 41353623
Alignment:
| Q |
129 |
tttctttcctgccagatgacccaaacacaagaaaaccaaatcaaatccataaaagagcgtc |
189 |
Q |
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|||||||| ||||| |||||||||||| ||| ||||||||| || | |||||||||||||| |
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| T |
41353683 |
tttctttcttgccaaatgacccaaacataagcaaaccaaattaagtgcataaaagagcgtc |
41353623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 12895678 - 12895758
Alignment:
| Q |
124 |
tgttgtttctttcctgccagatgacccaaacacaagaaaaccaaatcaaatccataaaagagcgtcttgctttcgagccac |
204 |
Q |
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||||||||||||| | || || |||| ||||||| |||||||||||| | ||||||||| || |||| ||||||||||| |
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| T |
12895678 |
tgttgtttctttcttatcaaataaccctaacacaaataaaccaaatcaagtgcataaaagaacgccttgttttcgagccac |
12895758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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