View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_87 (Length: 237)
Name: NF16632_low_87
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 30259462 - 30259626
Alignment:
| Q |
18 |
taactctggttagagttcaagaactcctaaatccaaagcataggtgctcctaactaaagagaaaactctcctaaccaactctaacaatattcataatgaa |
117 |
Q |
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| T |
30259462 |
taactctggttagagttcaagagctcctaaatccaaagcatag-tgctcctaactagagagaaaactctcctaaccaactctaacaatattcataatgaa |
30259560 |
T |
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| Q |
118 |
ttcttgtaataaccattccctactcatggacactcactaattaatgaaaattgcgcttcacccaac |
183 |
Q |
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| T |
30259561 |
ttcttgtaataaccattccctactcatggacactcactaattaatgaaaattgcgcttcacccaac |
30259626 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 44860729 - 44860683
Alignment:
| Q |
62 |
tgctcctaactaaagagaaaactctcctaaccaactctaacaatatt |
108 |
Q |
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| T |
44860729 |
tgctcctaaccagagagaaaactctcctaaccaactctaacaatatt |
44860683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 2911766 - 2911810
Alignment:
| Q |
64 |
ctcctaactaaagagaaaactctcctaaccaactctaacaatatt |
108 |
Q |
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| T |
2911766 |
ctcctaaccagagagaaaactctcccaaccaactctgacaatatt |
2911810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 7550244 - 7550200
Alignment:
| Q |
64 |
ctcctaactaaagagaaaactctcctaaccaactctaacaatatt |
108 |
Q |
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|||||||| | | |||||||||||||||||||| ||||||||||| |
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| T |
7550244 |
ctcctaaccagaaagaaaactctcctaaccaaccctaacaatatt |
7550200 |
T |
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