View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_9 (Length: 577)
Name: NF16632_low_9
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 561
Target Start/End: Complemental strand, 31484276 - 31483733
Alignment:
| Q |
18 |
cttagatccagagtcctcaaattgggcagattctgtgatgtgaaagatcaacaaaaatgcac-catcattttctttt-ctttaaaaatttatttttataa |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||| |||| ||||||| |
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| T |
31484276 |
cttagatcaagagtcctcaaattgggcagattctgtgatgtcaaagatcaacaaaaatgcaggcattattttctttttctttaaaagtttacctttataa |
31484177 |
T |
|
| Q |
116 |
ttgggtttggaagtttctaagagaggaatcattatacggaagaatatatagtcccttgtatcc---ccagagtagttcgatgctgctatatcaaccatga |
212 |
Q |
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| T |
31484176 |
ctgggtttgtaagtttctaagagcggaaaaattatacggaagaatatatagtaccttcttgccttcccagagttgtttgatgctgctat--ccaccatga |
31484079 |
T |
|
| Q |
213 |
tccattcaacaagttgattgggctgaaaatttgatggcaaacagctgaaaggatatccattccatgcaacgtaccttaattggttagaaagattgttgag |
312 |
Q |
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| T |
31484078 |
tcaattcaacaagttgattgggccgaaaatttgatggcaaatacatgaaaggatatccattccatgcaacgtaccttaattggttagaaagattgtcgag |
31483979 |
T |
|
| Q |
313 |
tactcttccaaaacattgaacatccttgagtataagtaatctaagacgactcatatttgacaatgcctcagccatcaatatctt-tgcatctctttcatt |
411 |
Q |
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| T |
31483978 |
t---cttcctaaacatttaacatctttgagtataagtaatctaagacggctcatatttgacaatgcctcaaccatcaat-tcttctgtatctctctcatt |
31483883 |
T |
|
| Q |
412 |
tccattcaaaactatggcttcaacannnnnnncctatagcattgcaaaagaagaagaagaaacctaattagttcaatatatattttgctttcatataaaa |
511 |
Q |
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| T |
31483882 |
tccattcaaaactatggcttcaacattcttttcctaaagcattgaaaaagaagaagaagaaacctagtcagttcaatgtatattttgctttcataaaaat |
31483783 |
T |
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| Q |
512 |
tggaaataagtaactactttaccatattctctgacataacatcatagcaa |
561 |
Q |
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| T |
31483782 |
tggaaataagtaaccactttaccatattctctgacataacatcatagcaa |
31483733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31491263 - 31491206
Alignment:
| Q |
18 |
cttagatccagagtcctcaaattgggcagattctgtgatgtgaaagatcaacaaaaat |
75 |
Q |
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| T |
31491263 |
cttagatccagattcctcaaattgggcagatactgtgatgtgaaataccaacaaaaat |
31491206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 31503388 - 31503302
Alignment:
| Q |
218 |
tcaacaagttgattgggctgaaaatttgatggcaaacagctgaaaggatatccattccatgcaacgtaccttaattggttagaaaga |
304 |
Q |
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|||||||||||||| ||||||||| |||| |||||| | ||||||||||| || ||||| |||| || ||||||| |||||||||| |
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| T |
31503388 |
tcaacaagttgatttggctgaaaacttgacggcaaatacttgaaaggatattcactccattcaacatatcttaattcgttagaaaga |
31503302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 31158048 - 31158109
Alignment:
| Q |
208 |
catgatccattcaacaagttgattgggctgaaaatttgatggcaaacagctgaaaggatatc |
269 |
Q |
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| T |
31158048 |
catgatcaattcaacaagttgattgggctgaaaacatgctggcaaatacttgaaaggatatc |
31158109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 31149177 - 31149242
Alignment:
| Q |
211 |
gatccattcaacaagttgattgggctgaaaatttgatggcaaacagctgaaaggatatccattcca |
276 |
Q |
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|||| |||| ||||||||||| ||| ||||| ||||||||||| | |||||||||||| |||||| |
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| T |
31149177 |
gatcaattcgacaagttgattaggcagaaaacttgatggcaaatacttgaaaggatatctattcca |
31149242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31471958 - 31471901
Alignment:
| Q |
18 |
cttagatccagagtcctcaaattgggcagattctgtgatgtgaaagatcaacaaaaat |
75 |
Q |
| |
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|||||||||| | | |||||||||||||||| |||||| ||||| |||||||||||| |
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| T |
31471958 |
cttagatccaaatttctcaaattgggcagatactgtgacatgaaaaatcaacaaaaat |
31471901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 33643869 - 33643818
Alignment:
| Q |
216 |
attcaacaagttgattgggctgaaaatttgatggcaaacagctgaaaggata |
267 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33643869 |
attctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggata |
33643818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 33286363 - 33286428
Alignment:
| Q |
211 |
gatccattcaacaagttgattgggctgaaaatttgatggcaaacagctgaaaggatatccattcca |
276 |
Q |
| |
|
|||| |||| ||||||| |||||| |||||||||||||||||| | |||||||||||||| |||| |
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| T |
33286363 |
gatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatatccagtcca |
33286428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 13610415 - 13610358
Alignment:
| Q |
211 |
gatccattcaacaagttgattgggctgaaaatttgatggcaaacagctgaaaggatat |
268 |
Q |
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|||| |||||||||||| || ||||||||| ||||||||||||| ||||||||||| |
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| T |
13610415 |
gatcaattcaacaagtttatccggctgaaaacttgatggcaaacatgtgaaaggatat |
13610358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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