View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16632_low_92 (Length: 225)
Name: NF16632_low_92
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_92 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12825473 - 12825682
Alignment:
| Q |
1 |
ttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12825473 |
ttatcattccttgctttccacaaaaccaaactcgtagaatgccgaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacact |
12825572 |
T |
|
| Q |
101 |
cccaatgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaata |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12825573 |
cccaaagaacgaataaattaggcggaattaaatgaaacttatcccatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaata |
12825672 |
T |
|
| Q |
201 |
gatgaattga |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
12825673 |
gatgaattga |
12825682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 35024563 - 35024688
Alignment:
| Q |
6 |
attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
105 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| |||||||||||| ||||| | ||||| ||| |||||||||||| || || |||||||||||||| |
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| T |
35024563 |
attcctagctttccataacacccaaatcgtaatatgccaaataagccttaattcgttacgagttctcttattcctctcccctccgaaccaacactcccaa |
35024662 |
T |
|
| Q |
106 |
tgaacgaataaattaggcggaattaa |
131 |
Q |
| |
|
| | ||| || ||||| |||||||| |
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|
| T |
35024663 |
aggatgaagaagttagggggaattaa |
35024688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 34774684 - 34774891
Alignment:
| Q |
6 |
attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
105 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || ||||| ||| |||||||||||| || || ||||||||||||||| |
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|
| T |
34774684 |
attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaa |
34774783 |
T |
|
| Q |
106 |
tgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga |
205 |
Q |
| |
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| | ||| || ||||| |||||||| | | | ||| | || |||||| ||||| ||||| || || | |||||||||||||| |||||||||||| |
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| T |
34774784 |
aggatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatga |
34774882 |
T |
|
| Q |
206 |
attgatgat |
214 |
Q |
| |
|
||||||||| |
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|
| T |
34774883 |
attgatgat |
34774891 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 42748870 - 42749073
Alignment:
| Q |
6 |
attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
105 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || |||| ||| |||||||||||| || || | ||||||||||||| |
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|
| T |
42748870 |
attcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactcccaa |
42748969 |
T |
|
| Q |
106 |
tgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga |
205 |
Q |
| |
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||| ||| || ||||| |||||||| | | | ||| | || |||||| ||||| ||||| || || |||||||||||||||||||||| |||||| |
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|
| T |
42748970 |
agaatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccacactctaccggcaacctcacaatgaagaaaaagatga |
42749068 |
T |
|
| Q |
206 |
attga |
210 |
Q |
| |
|
||||| |
|
|
| T |
42749069 |
attga |
42749073 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 37035568 - 37035363
Alignment:
| Q |
4 |
tcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactccc |
103 |
Q |
| |
|
||||| || |||||||| |||||| ||||||| ||||||||| | |||||| || | ||| || |||||| ||||||| || |||| ||||||||||| |
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|
| T |
37035568 |
tcatttctagctttccataaaacccaaatcgtaacatgccaaattaatcttaacccctgacgaatacgcttaatcctctccccgccactccaacactccc |
37035469 |
T |
|
| Q |
104 |
aatgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagat |
203 |
Q |
| |
|
| || ||||||||||||||||||| | |||| | ||| | || |||||| | | | |||| |||||| |||||||||||||||| ||||| |||| |
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|
| T |
37035468 |
ataagacaaataaattaggcggaattacaataaacctctcccacca-ccccataatatcacgccacacccttccggcaacctcacaatggagaaaaagat |
37035370 |
T |
|
| Q |
204 |
gaattga |
210 |
Q |
| |
|
|| |||| |
|
|
| T |
37035369 |
gagttga |
37035363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 24189517 - 24189425
Alignment:
| Q |
39 |
atgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaa |
131 |
Q |
| |
|
||||||||||||||||| || ||||| |||| ||||||| ||| ||||||| ||||||||||||| || |||| || |||||| ||||||| |
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|
| T |
24189517 |
atgccaaataagtcttaggcccttacgaattctcttattctgctcgccaccactccaacactcccaaagagcgaacaagttaggcagaattaa |
24189425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 47820222 - 47820122
Alignment:
| Q |
4 |
tcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactccc |
103 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||| ||||||||| | |||||| || ||| || | ||| |||||||| ||||| ||||||||||||| |
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|
| T |
47820222 |
tcattcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactccc |
47820123 |
T |
|
| Q |
104 |
a |
104 |
Q |
| |
|
| |
|
|
| T |
47820122 |
a |
47820122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 28571679 - 28571641
Alignment:
| Q |
93 |
ccaacactcccaatgaacgaataaattaggcggaattaa |
131 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
28571679 |
ccaacactcccaatgcacaaataaattaggcggaattaa |
28571641 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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