View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16632_low_94 (Length: 225)
Name: NF16632_low_94
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16632_low_94 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 1244308 - 1244152
Alignment:
| Q |
55 |
taataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggtagtgactaagataagtgtgtatggt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1244308 |
taataatcttaatgtattcatatccttttaatttactcttctacacgtcttttttgacttaagcttcttaatggtagtgactaagataagtgtgtatggt |
1244209 |
T |
|
| Q |
155 |
tattttaagttaatttatgcaacatatgacatgcctcatcaatatttctagaattat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1244208 |
tattttaagttaatttatgcaacatatgacatgcctcatcaatatttctagaattat |
1244152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 1248628 - 1248459
Alignment:
| Q |
33 |
tcttctcctacatacatatatctaataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggtagt |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||| | |||||||| || |
|
|
| T |
1248628 |
tcttttcctacatacatatatctaataatcttaatgtatccttatccttttaatttacccttctacacattttttt----------tacttaatggctgt |
1248539 |
T |
|
| Q |
133 |
gactaagataagtgtgtatggttattttaagttaatttatgcaa-catatgacatgcctcatcaatatttctagaattat |
211 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||| ||||| ||| |||||||||||| |||| ||| ||| | ||||||| |
|
|
| T |
1248538 |
gactaagataattatgtatggtgattttaagttattttatccaaccatatgacatgcttcatgaatgtttttggaattat |
1248459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 1228798 - 1228723
Alignment:
| Q |
54 |
ctaataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggt |
129 |
Q |
| |
|
|||||| ||||||||||| | |||||||||| ||||||| || ||| | |||||| ||||||||||||||||||| |
|
|
| T |
1228798 |
ctaatattcttaatgtatccttatccttttactttactcatccccacttttttttttacttaagcttcttaatggt |
1228723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 1234409 - 1234369
Alignment:
| Q |
46 |
acatatatctaataatcttaatgtattcatatccttttaat |
86 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
1234409 |
acatatatctaataatcttaatctatccttatccttttaat |
1234369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University