View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_96 (Length: 220)

Name: NF16632_low_96
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_96
NF16632_low_96
[»] chr4 (13 HSPs)
chr4 (64-211)||(54785203-54785350)
chr4 (64-211)||(21604383-21604530)
chr4 (74-211)||(47825875-47826012)
chr4 (64-211)||(46164381-46164528)
chr4 (64-211)||(8432995-8433142)
chr4 (119-211)||(13740267-13740359)
chr4 (119-211)||(21355879-21355971)
chr4 (119-211)||(23218235-23218327)
chr4 (119-211)||(45143984-45144076)
chr4 (119-211)||(45152753-45152845)
chr4 (132-192)||(38115466-38115526)
chr4 (127-190)||(14800033-14800096)
chr4 (119-211)||(33753978-33754070)
[»] chr8 (17 HSPs)
chr8 (64-211)||(22432306-22432453)
chr8 (64-211)||(29182590-29182737)
chr8 (64-204)||(27576720-27576860)
chr8 (64-208)||(774698-774843)
chr8 (119-211)||(1668117-1668209)
chr8 (119-211)||(16658832-16658924)
chr8 (119-211)||(38521241-38521333)
chr8 (119-211)||(6786449-6786542)
chr8 (66-198)||(43916064-43916192)
chr8 (64-144)||(780417-780497)
chr8 (132-211)||(22014860-22014939)
chr8 (121-192)||(11472393-11472467)
chr8 (64-129)||(18068532-18068597)
chr8 (127-190)||(42808687-42808750)
chr8 (171-211)||(780377-780417)
chr8 (127-190)||(33360397-33360460)
chr8 (119-163)||(34212961-34213005)
[»] chr7 (6 HSPs)
chr7 (64-211)||(6472259-6472406)
chr7 (64-211)||(9371764-9371911)
chr7 (80-211)||(21358037-21358168)
chr7 (74-208)||(35012992-35013126)
chr7 (121-198)||(44660323-44660400)
chr7 (127-190)||(31419280-31419343)
[»] chr1 (9 HSPs)
chr1 (64-211)||(29599266-29599413)
chr1 (64-211)||(324636-324783)
chr1 (64-198)||(48184196-48184330)
chr1 (64-211)||(26354962-26355110)
chr1 (132-211)||(6165054-6165133)
chr1 (132-211)||(16764542-16764621)
chr1 (144-211)||(26014504-26014571)
chr1 (134-211)||(10801573-10801650)
chr1 (119-211)||(17481002-17481094)
[»] chr5 (8 HSPs)
chr5 (64-211)||(3174121-3174268)
chr5 (64-211)||(10572660-10572807)
chr5 (64-211)||(32863605-32863748)
chr5 (121-198)||(43300188-43300265)
chr5 (121-211)||(19209127-19209217)
chr5 (121-198)||(23737896-23737973)
chr5 (121-198)||(41958626-41958703)
chr5 (127-190)||(22273180-22273243)
[»] chr3 (6 HSPs)
chr3 (64-211)||(9456371-9456518)
chr3 (123-211)||(21239451-21239539)
chr3 (119-211)||(52893443-52893535)
chr3 (119-206)||(2338834-2338921)
chr3 (127-190)||(40922976-40923039)
chr3 (127-190)||(2733793-2733856)
[»] chr2 (4 HSPs)
chr2 (64-211)||(25697582-25697729)
chr2 (119-211)||(3935387-3935479)
chr2 (119-211)||(38978388-38978480)
chr2 (167-211)||(32339602-32339646)
[»] chr6 (5 HSPs)
chr6 (64-211)||(32397189-32397337)
chr6 (119-198)||(9303017-9303095)
chr6 (127-190)||(7171047-7171110)
chr6 (119-163)||(14654645-14654689)
chr6 (107-163)||(32397754-32397808)
[»] scaffold0393 (1 HSPs)
scaffold0393 (119-211)||(11184-11276)
[»] scaffold1160 (1 HSPs)
scaffold1160 (119-198)||(2479-2558)
[»] scaffold0285 (1 HSPs)
scaffold0285 (132-211)||(8388-8467)
[»] scaffold0054 (1 HSPs)
scaffold0054 (132-211)||(2888-2967)
[»] scaffold1084 (1 HSPs)
scaffold1084 (121-192)||(1217-1288)
[»] scaffold1300 (1 HSPs)
scaffold1300 (132-192)||(960-1020)
[»] scaffold0005 (1 HSPs)
scaffold0005 (127-190)||(39631-39694)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 54785350 - 54785203
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54785350 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 54785251  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  54785250 tgtgaaattgaatgtaatttccttcaattatgattctgatttgatgat 54785203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 21604383 - 21604530
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604383 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 21604482  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21604483 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 21604530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 47825875 - 47826012
Alignment:
Q  74 cctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattg 173  Q
    |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47825875 cctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattg 47825974  T
Q  174 aatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  47825975 aatgtaatttccttcaattctgattctgatttgatgat 47826012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 46164528 - 46164381
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46164528 gccgcacccccctctatcttctatattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 46164429  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46164428 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 46164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 8433142 - 8432995
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| |||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8433142 gccgcacccccctcaatcttctgtattgattctttagtttagaaagctatctccatccatctctctccacaaaccctaattgttgttacttgtaaggtaa 8433043  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  8433042 tgtgaaattgaatgttatttccttcaattctgattctgatttgatgat 8432995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 13740359 - 13740267
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  13740359 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 13740267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 21355879 - 21355971
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  21355879 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaacgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 21355971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 23218327 - 23218235
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  23218327 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 23218235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 45143984 - 45144076
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  45143984 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 45144076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 45152753 - 45152845
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  45152753 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 45152845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 38115466 - 38115526
Alignment:
Q  132 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 192  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38115466 acaaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 38115526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 14800096 - 14800033
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| |||||| ||  |||||||| ||||||| |||||| ||||||||||    
T  14800096 tctccacaaaccctaatttttgtaaatttcaaggtaatatgaaattaaatgtattttccttcaa 14800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 33754070 - 33753978
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggt-aatgtgaaat--tgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||| |||||||||||||||||||||||   |||| || ||  ||||||  |||||||||||| |||||||| ||||| ||||||||||||    
T  33754070 tccatctctttccacaaaccctaattgttgtaa---gtaatgtgaaattgaaatattgaatgtaattttcttcaattatgattttgatttgatgat 33753978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 22432453 - 22432306
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432453 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 22432354  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22432353 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 22432306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 29182737 - 29182590
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29182737 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 29182638  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29182637 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 29182590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 27576720 - 27576860
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27576720 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 27576819  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatt 204  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  27576820 tgtgaaattgaatgtaatttccttcaattctgattctgatt 27576860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 774843 - 774698
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  774843 gccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccatccttctccacaaaccctaattgttgtaacttataaggtaa 774744  T
Q  164 tgtgaaa-ttgaatgtaatttccttcaattctgattgtgatttgat 208  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||||    
T  774743 tgtgaaatttgaatgtaatttccttcaattctgattctgatatgat 774698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 1668117 - 1668209
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  1668117 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 1668209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 16658832 - 16658924
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  16658832 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 16658924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 38521333 - 38521241
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  38521333 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 38521241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 6786449 - 6786542
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaa-ttgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  6786449 tccatctctctccacaaaccctaattgctgtaacttgtaaggtaatgtgaaatttgaatgtaacttccttcaattctgattttgatttgatgat 6786542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 43916064 - 43916192
Alignment:
Q  66 cgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatg 165  Q
    |||||||||||| || |||||| ||||||||| ||||||| ||||| ||||||    |||||||||| ||||||| |||||||||| |||||||| ||||    
T  43916064 cgcatcctcctctattttctgtgttgattcttcagtttagagagctatctcca----tctctctccataaaccctgattgttgtaaattgtaaggaaatg 43916159  T
Q  166 tgaaattgaatgtaatttccttcaattctgatt 198  Q
    |||| || ||||||||||||||||| |||||||    
T  43916160 tgaattttaatgtaatttccttcaaatctgatt 43916192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 780497 - 780417
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaatt 144  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||  ||||||||||||||||||    
T  780497 gccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccatccttctccacaaaccctaatt 780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 22014860 - 22014939
Alignment:
Q  132 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |  |||||||||    
T  22014860 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaatttccttcaattatgattattgtttgatgat 22014939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 11472467 - 11472393
Alignment:
Q  121 catctctctccaca---aaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 192  Q
    ||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11472467 catctctctccacagaaaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 11472393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 18068532 - 18068597
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctct 129  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  18068532 gccgcatcctcctcaatcttctgtattgattctttagtttagagagctatctccatccatctctct 18068597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 42808687 - 42808750
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| |||||| ||| |||||||| |||||||||||||| ||||||||||    
T  42808687 tctccacaaaccctaattcttgtaaattgcaaggtaatatgaaattgaatgtattttccttcaa 42808750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 780417 - 780377
Alignment:
Q  171 ttgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  780417 ttgaatgtaatttccttcaattctgattctgatttgatgat 780377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 33360397 - 33360460
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| | |||| ||| ||| |||| |||||||||||||| ||||||||||    
T  33360397 tctccacaaaccctaattctggtaaattgcaagttaatatgaaattgaatgtattttccttcaa 33360460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 34213005 - 34212961
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    ||||||||||||||||||||||| || |||||| |||||||||||    
T  34213005 tccatctctctccacaaaccctagttcttgtaaattgtaaggtaa 34212961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 6472406 - 6472259
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472406 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 6472307  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6472306 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 6472259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 9371764 - 9371911
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371764 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 9371863  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9371864 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 9371911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 21358168 - 21358037
Alignment:
Q  80 tcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgta 179  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21358168 tcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgta 21358069  T
Q  180 atttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||| ||||||||||||    
T  21358068 atttccttcaattctgattctgatttgatgat 21358037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 35013126 - 35012992
Alignment:
Q  74 cctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattg 173  Q
    |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35013126 cctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattg 35013027  T
Q  174 aatgtaatttccttcaattctgattgtgatttgat 208  Q
    |||||||||||||||||| |||||| |||||||||    
T  35013026 aatgtaatttccttcaatcctgattctgatttgat 35012992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 44660323 - 44660400
Alignment:
Q  121 catctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 198  Q
    |||||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  44660323 catctctctccataaaccctaattgttctaaattataaggtaatgtgaaattgaatgtaatttcgttcaattctgatt 44660400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 31419280 - 31419343
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| |||||| ||| ||||||||  ||||||||||||| ||||||||||    
T  31419280 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatgtattttccttcaa 31419343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 29599413 - 29599266
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29599413 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 29599314  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29599313 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 29599266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 324636 - 324783
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  324636 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaagccctaattgttgtaacttgtaaggtaa 324735  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  324736 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 324783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 48184196 - 48184330
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48184196 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 48184295  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgatt 198  Q
    |||||||||||||||||||||||||||||||||||    
T  48184296 tgtgaaattgaatgtaatttccttcaattctgatt 48184330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 26354962 - 26355110
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||||||||||| |||||||||||||||||| ||||| || ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  26354962 gccgcatcctcctccatcttctgtattgattctatagttcagagagctatctccatccatccttctccacaaaccctaattgttgtaacttgtaaggtaa 26355061  T
Q  164 tgtgaaa-ttgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  26355062 tgtgaaatttgaatgtaacttccttcaattctgattctgatttgatgat 26355110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 6165133 - 6165054
Alignment:
Q  132 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  6165133 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgat 6165054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 16764621 - 16764542
Alignment:
Q  132 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  16764621 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgat 16764542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 26014504 - 26014571
Alignment:
Q  144 tgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26014504 tgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 26014571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 10801650 - 10801573
Alignment:
Q  134 aaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  10801650 aaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgat 10801573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 17481094 - 17481002
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||| | ||||| |  |||||||||    
T  17481094 tccatctctctccacaaatcctaattcttgtaaattgtaaggtaatgtgaaattgaatgtattttccttcaaatatgattattctttgatgat 17481002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 3174121 - 3174268
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174121 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 3174220  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  3174221 tgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 3174268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 10572660 - 10572807
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572660 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 10572759  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  10572760 tgtgaaattgaatgtaatttccttcaattgtgattctgatttgatgat 10572807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 32863605 - 32863748
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||    |||||||||||||||||||||||||||||||||    
T  32863605 gccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatctc----cacaaaccctaattgttgtaacttgtaaggtaa 32863700  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32863701 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 32863748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 43300188 - 43300265
Alignment:
Q  121 catctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 198  Q
    |||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  43300188 catctctctccataaaccctaattgttgtaaattataaggtaatgtgaaattgaatgtaatttcgttcaattctgatt 43300265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 19209217 - 19209127
Alignment:
Q  121 catctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||||||| || ||| |||||    
T  19209217 catctctctccataaaccctaattgttgtaaatcgtaaggtaacgtgaaattgaatgtaatttccttcaaatctgattctgctttaatgat 19209127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 23737896 - 23737973
Alignment:
Q  121 catctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 198  Q
    |||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||| |||||||    
T  23737896 catctctctccataaaccctaattgttgtaaattgtaaggtaacatgaaattgaatgtaatttccttcaaatctgatt 23737973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 41958703 - 41958626
Alignment:
Q  121 catctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 198  Q
    |||||||||||| |||||||||||||||| | ||  |||||||||||||||||||||||||||| |||||||||||||    
T  41958703 catctctctccataaaccctaattgttgttaattacaaggtaatgtgaaattgaatgtaatttcgttcaattctgatt 41958626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 22273243 - 22273180
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| |||||| ||| ||||||||  |||||||||| || ||||||||||    
T  22273243 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaa 22273180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 9456371 - 9456518
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| |||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9456371 gccgcacccccctcaatcttctgtattgattctttagtttagacagctatctccatccatctctctccacaaaccctaattgttgtaacttgaaaggtaa 9456470  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9456471 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 9456518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 21239451 - 21239539
Alignment:
Q  123 tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21239451 tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattatgatttgatgat 21239539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 52893443 - 52893535
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  52893443 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 52893535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 2338921 - 2338834
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  2338921 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttg 2338834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 40922976 - 40923039
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| |||||| ||| ||||||||  ||||||||||||| ||||||||||    
T  40922976 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatgtattttccttcaa 40923039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 2733793 - 2733856
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| |||||| ||| ||||||||  |||||||||| || ||||||||||    
T  2733793 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaa 2733856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 25697729 - 25697582
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||| || |||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25697729 gccgcacccccctcaatcttctgtatagattctttagtttagagagctatctccatccatctctctccacaaaccctaattgttgttacttgtaaggtaa 25697630  T
Q  164 tgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25697629 tgtgaaattgaatgtaatttccttcaattctgattctgatttgatgat 25697582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 3935479 - 3935387
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  3935479 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattataatttgatgat 3935387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 38978480 - 38978388
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  38978480 tccatctctctccacaaaccctaattgttgtaacttgtaaggtagtgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 38978388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 32339602 - 32339646
Alignment:
Q  167 gaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||    
T  32339602 gaaattgaatgtaattttcttcaattatgattctgatttgatgat 32339646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 32397189 - 32397337
Alignment:
Q  64 gccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    |||||||||||||| |||||||  |||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  32397189 gccgcatcctcctccatcttcttaattgattctttagtttagagagctatctccatccatccttctccacaaaccctaattgttgtaacttataaggtaa 32397288  T
Q  164 tgtgaaa-ttgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  32397289 tgtgaaatttgaatgtaatttccttcaattctgattctgatttgatgat 32397337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 9303017 - 9303095
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 198  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  9303017 tccatctctctccacaaaccctaattgtta-aacttgaaaggtaatgtgaaattgaatgtaatttccttcaattttgatt 9303095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 7171047 - 7171110
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| |||||| ||| ||||||||  |||||||||| || ||||||||||    
T  7171047 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaa 7171110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 14654689 - 14654645
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    ||||||||||||||||||||||| || |||||| |||||||||||    
T  14654689 tccatctctctccacaaaccctagttcttgtaaattgtaaggtaa 14654645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 32397754 - 32397808
Alignment:
Q  107 gagctgtctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 163  Q
    ||||| ||||||||  ||||||||||||||||||| || |||||| |||||||||||    
T  32397754 gagctatctccatc--tctctctccacaaaccctagttcttgtaaattgtaaggtaa 32397808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 11276 - 11184
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  11276 tccatctctctccacaaatcctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgat 11184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 2479 - 2558
Alignment:
Q  119 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2479 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 2558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 8467 - 8388
Alignment:
Q  132 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  8467 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgat 8388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 2888 - 2967
Alignment:
Q  132 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattgtgatttgatgat 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  2888 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgat 2967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 1217 - 1288
Alignment:
Q  121 catctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 192  Q
    |||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1217 catctctcacaacaaacactaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 1020 - 960
Alignment:
Q  132 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 192  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  1020 acaaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttcctttaatt 960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 39631 - 39694
Alignment:
Q  127 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 190  Q
    |||||||||||||||||| |||||| ||  |||||||| ||||||| |||||| ||||||||||    
T  39631 tctccacaaaccctaatttttgtaaatttcaaggtaatatgaaattaaatgtattttccttcaa 39694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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