View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16632_low_99 (Length: 213)

Name: NF16632_low_99
Description: NF16632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16632_low_99
NF16632_low_99
[»] chr6 (1 HSPs)
chr6 (16-110)||(28963075-28963169)
[»] chr8 (2 HSPs)
chr8 (16-109)||(3442750-3442843)
chr8 (16-104)||(24115842-24115931)
[»] chr4 (1 HSPs)
chr4 (32-109)||(26683799-26683875)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 28963169 - 28963075
Alignment:
Q  16 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttct 110  Q
    |||||||||||||| ||||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28963169 atgaattagttaaaggaaagataaaaatccaaggtcagcaattcattcctaagttgtcgtgcatggtttgctctcgtaccataaagcatttttct 28963075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 3442750 - 3442843
Alignment:
Q  16 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttc 109  Q
    |||||||||||||  ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||    
T  3442750 atgaattagttaatggaaagataaaaatccaagggcagcaattcattcgtaagttgtcgtgcatggtttgttctcgtgcaataaagcatttttc 3442843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 24115842 - 24115931
Alignment:
Q  16 atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcat-ggtttgctctcgtaccataaagcat 104  Q
    |||||||| ||||| ||||||||||||| |||| | ||||||||||||  |||||||||||||| |||||| ||||||||||||||||||    
T  24115842 atgaattaattaaatgaaagataaaaatccaagggaagcaattcattcgcaagttgtcgtgcatgggtttgttctcgtaccataaagcat 24115931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 26683799 - 26683875
Alignment:
Q  32 aaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttc 109  Q
    ||||||||||||||||| || ||| ||||||   |||||||||||||||||||||||| |||||||||||||||||||    
T  26683799 aaagataaaaattcaagggcggca-ttcatttgcaagttgtcgtgcatggtttgctcttgtaccataaagcatttttc 26683875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University