View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16633_high_1 (Length: 606)
Name: NF16633_high_1
Description: NF16633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16633_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 14 - 590
Target Start/End: Original strand, 36884734 - 36885310
Alignment:
| Q |
14 |
atcaatagacaactgtgtaaaattggcttacaaacttagtgtatattcatagttatcaaactcaaattaatccttgtactggtgtaaattttttctcttc |
113 |
Q |
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||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36884734 |
atcaatagacagctgtgtaaaattggcgtacaaactcagtgtatattcatagttatcaaactcaaattaatccttgtaccagtgtaaattttttctcttt |
36884833 |
T |
|
| Q |
114 |
ccttgaagaaatgaaaaggcttgtacatatgcactcatactataagcgcatacggaactagtgtttgattgagttgtttcttcaaannnnnnntaaattg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36884834 |
tcttgaagaaatgaaaaggcttgtacatatgcactcatactataagcgcatatggaactagtgtttgattgagttgtttcttcaaacaccccctaaattg |
36884933 |
T |
|
| Q |
214 |
aaaatgactatcatgtataagagccataggtgtaggttctcgatccttgtatatgattatgatgcctacgaggagcttatgaaagtaactttgagcatat |
313 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36884934 |
aaaatgactatcatgtataagaaccataggtgtaggttctcgatccttgtatatgattatgatgcctacaaggagcttatgaaagtaactttgagcatat |
36885033 |
T |
|
| Q |
314 |
cataagctaaatttgtaagttctgaatcctatctcacagccattttagtagctgaggtggggaggacaaaactaaaaagtattgttttgnnnnnnnaaaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36885034 |
cataagctaaatttgtaagttctgaatcctatctcacagccattttagtagctgaggtggggaggacaaaactaaaaagtattgttttgtttttttaaaa |
36885133 |
T |
|
| Q |
414 |
gtattgtgcgtagtgtctaaatagaaaacttttgtcgttgaagaacataatccctgtcaatgaaaataggagggcacagccgtgatgaaagaaaatgata |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36885134 |
gtattgtgcgtagtgtctaaatagaaaacttttgtcgttgaagaacgtaatccctgtcaatgaaaataggagggcacagccgtgatgaaagaaaatgata |
36885233 |
T |
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| Q |
514 |
tatccggattcatcaacacttgaggtcaattacttggttaatgacatgtgcactccaaactttgaaaaggtaatttt |
590 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36885234 |
tatccggattcattaacacttgaggtcaattacttggttaatgacatgtgcactccaaactttgaaaaggtaatttt |
36885310 |
T |
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